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The map label for this gene is yhjC [H]

Identifier: 53722277

GI number: 53722277

Start: 1699715

End: 1700722

Strand: Reverse

Name: yhjC [H]

Synonym: BPSS1255

Alternate gene names: 53722277

Gene position: 1700722-1699715 (Counterclockwise)

Preceding gene: 53722279

Following gene: 53722275

Centisome position: 53.6

GC content: 72.72

Gene sequence:

>1008_bases
ATGGACCGATTTCAGGAAATGCAGGTTTTCGTGCGGATCGCCGAGCGGCAGAGCTTCAGCCGGGCGTCGGACGATCTGCG
GATTCCGCGCGCGACCGTGACCAACCTGATGAAGCGCATGGAGGCGCGGCTCGGCGCGCGGCTGCTCGAACGGACGACGC
GCACCGTGCGCCTCACGCAGGACGGCGAAGCCTACTACCGGCGCTGCGTGCGGCTGATCGCCGATCTGGAGGAGGCCGAG
GGCGCGTTTCGCGCCGCGGCGCCGCGGGGGCTGCTGCGCGTGAACCTGCAGGGCACGCTCGCGCGCTATTTCGTCGTGCC
CGCGCTGCCGGATTTTCTCGCGCGCTATCCGGGGATCCGGCTGCACATCGGCGAGGACGACCGCTTCGTCGATCTGGTGC
GCGAGGGCGTCGATTGCGTGCTGCGCTCGGGCAACCTGCAGGATTCGTCGATGGTCGGGCGGCGGGTCGCGCAGCTCGAG
CAGGTGACGGTCGCGAGCCCCGGCTATCTCGCGCGGCACGGCGAGCCGGCCGAGCTCGCCGCGCTGGCCGCGCATCGCGC
GGTCGACTATGTGTCGAGCGCGACGGGCAAGCCGATGCCGCTCGAATTCACCGTCGACGGGCGCGTGACCGAGGTGCGGC
TCGACGCGGCGATTTCCGTCGCGGGCGTCGAGCTCTACACGGGCGCGGCCGTCGCGGGGCTCGGCATCGTGCAGGTGCCG
CGCTACCGGATCGCCGACGAACTGGCCGACGGACGCCTGAGGATCGTGCTCGGCGCGTATCCGCCGCCGCCGATGCCCGT
CAGCGTGCTGTATCCGCACAGCCGGCAGTTGTCGTCGCGCGTGCGGGCGTTCGCGCAGTGGCTGCGGGAGCGGTTCGACG
CGGCGCAGGCGGGGGCGGGCGACGGCGCGTGCGGCGCGCCGGGCTCTTCGGGTTCCGCCGCGCGCGCGCCGTCGCCGGCT
CGGTCGGAACCGGCGAAAGCGTTGCTATCGCGGCGGCCGCGTCGCTAG

Upstream 100 bases:

>100_bases
TGGATGGGACGAATGATCGGCCATTCCATCGCAGAGATAATCATGATCAAATGGATATCATCATTCCATTTGCTTTAACG
ATCAGCCGAGGACCGACGCG

Downstream 100 bases:

>100_bases
ATTCGTCTTCGTTGTCGCGAACACGCCCGATGCGGGGGGCACGCGATGAAAACGATCGAACTGATCGGCGGGATGAGCGG
GGAATCGTCGGCCGCATACT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGEAYYRRCVRLIADLEEAE
GAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIRLHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLE
QVTVASPGYLARHGEPAELAALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGAGDGACGAPGSSGSAARAPSPA
RSEPAKALLSRRPRR

Sequences:

>Translated_335_residues
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGEAYYRRCVRLIADLEEAE
GAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIRLHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLE
QVTVASPGYLARHGEPAELAALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGAGDGACGAPGSSGSAARAPSPA
RSEPAKALLSRRPRR
>Mature_335_residues
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGEAYYRRCVRLIADLEEAE
GAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIRLHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLE
QVTVASPGYLARHGEPAELAALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGAGDGACGAPGSSGSAARAPSPA
RSEPAKALLSRRPRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=37.5862068965517, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=31.8791946308725, Blast_Score=161, Evalue=7e-41,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=28.2828282828283, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=26.6211604095563, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.8194444444444, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=28.4280936454849, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1789440, Length=306, Percent_Identity=24.5098039215686, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789173, Length=138, Percent_Identity=32.6086956521739, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=32.6086956521739, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788706, Length=172, Percent_Identity=27.3255813953488, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI145693105, Length=251, Percent_Identity=28.2868525896414, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=293, Percent_Identity=24.9146757679181, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36631; Mature: 36631

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
DGEAYYRRCVRLIADLEEAEGAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIR
CCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHHHHCCCEE
LHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA
EEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHH
ALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
HHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHEECCHHHHCCHHHHCCCHHHCC
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGAG
CHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGACGAPGSSGSAARAPSPARSEPAKALLSRRPRR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
DGEAYYRRCVRLIADLEEAEGAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIR
CCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHHHHCCCEE
LHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA
EEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHH
ALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
HHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHEECCHHHHCCHHHHCCCHHHCC
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGAG
CHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGACGAPGSSGSAARAPSPARSEPAKALLSRRPRR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]