| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is 53722125
Identifier: 53722125
GI number: 53722125
Start: 1472313
End: 1473446
Strand: Reverse
Name: 53722125
Synonym: BPSS1097
Alternate gene names: NA
Gene position: 1473446-1472313 (Counterclockwise)
Preceding gene: 53722126
Following gene: 53722120
Centisome position: 46.44
GC content: 70.37
Gene sequence:
>1134_bases ATGAACGAAACCGATGACGCGCCGCTTCACGCCCGCGTGCGCCTGTTTCTCTGCGGCGATGTGATGACGGGCCGCGGGAT CGACCAGATCCTGCCGCATCCGGGCGCCCCCCGGCTATACGAGCGCTATTGCCGTTCGGCGCGCGACTACGTGCGGCTTG CCGAGCGCGCGAACGGCGAATTGCCCGCGCGCGTCGACTGCGCGTACCCGTGGGGCGACGCGCTCGCGGAACTCGACCGC GTGCGGCCGCACGTGCGGATCGTCAACCTGGAAACCGCGATCACGACGAGCGATGCGCGCTGGCCCGACAAGGCCGTCCT GTATCGGATGCATCCGCGCAACGTCGGCTGCGTGTCGAGCGCGCGGATCGATTGCTGCGTGCTCGCGAACAATCATTCGC TCGACTGGGGGCGCGAGGGCCTCGCCGATACGCTCGACACGCTGCGGCGGGCCGGCATCCGTACCGCCGGCGCGGGCGAC GACGACGCGCATGCGGCGCGGCCCGCCACGCTCGGCGTCGCGCCCGGGCGCCGCGTGCTCGTGTATGCGTACGCGGCCGA AACGAGCGGCGTGCCGCCGTCATGGGCGGCGACGCCGCGGCGCGGCGGCCTCAACTACCTGGCGGATCTGTCGTCCGGGC GGGCGACGCAGATCGGCGAGCGGATCGCCGCGCAGCGCCGCGAGGGCGATCTCGTCGTCGTGTCGCTCCATTGGGGCGGC AACTGGGGATTCGAGATCGGCGACGACGAGCACGCATTCGCGCACCGGCTGATCGACACCGGCGCGGCCGACATCGTCTA CGGCCATTCATCGCATCACGTCAAGGGCATCGAGATCTACCGGGAGCGGCTGATCCTGTACGGTTGCGGCGATTGCCTGA ACGACTACGAAGGCATCCACGGCCACCAGCCGTTCCGGCCGGATCTCGCGCTGATGTACTTTCCGGTGCTCGATGCCGGC AGCGGCGCGCTCGTCGAGCTGTCGGCGGTGCCGATGCAGATCCGGAACCTGCGGCTGCAACGCGCGCCCGCCGACGGCAA AGCGTGGCTGCACGCGGTGCTGGAGCGCGAGAGCCGGCGTTTCGGCACGCACGTGTCGGCGTGCGATGTCGACGGGCTGC ATGTGCACTGGTGA
Upstream 100 bases:
>100_bases CGTCGTGCGCCGTGCCGGCGCGCCGCGCGCCGGGGGCCGCACCGAACAGTTTGATGGGGATGGGAGGCGCGCGCGCCCGA GCGGCGCGCGCGGCGATGCG
Downstream 100 bases:
>100_bases CGCGGGGGCGGGCGTCGGCCGCGCCGCGCGATCCGGCGCGAAGGCGCATCGCGCGCCGCGCCGCGCGATGCGCGTTCTTC ACGGACCGGGACTGGCGTAG
Product: capsule biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MNETDDAPLHARVRLFLCGDVMTGRGIDQILPHPGAPRLYERYCRSARDYVRLAERANGELPARVDCAYPWGDALAELDR VRPHVRIVNLETAITTSDARWPDKAVLYRMHPRNVGCVSSARIDCCVLANNHSLDWGREGLADTLDTLRRAGIRTAGAGD DDAHAARPATLGVAPGRRVLVYAYAAETSGVPPSWAATPRRGGLNYLADLSSGRATQIGERIAAQRREGDLVVVSLHWGG NWGFEIGDDEHAFAHRLIDTGAADIVYGHSSHHVKGIEIYRERLILYGCGDCLNDYEGIHGHQPFRPDLALMYFPVLDAG SGALVELSAVPMQIRNLRLQRAPADGKAWLHAVLERESRRFGTHVSACDVDGLHVHW
Sequences:
>Translated_377_residues MNETDDAPLHARVRLFLCGDVMTGRGIDQILPHPGAPRLYERYCRSARDYVRLAERANGELPARVDCAYPWGDALAELDR VRPHVRIVNLETAITTSDARWPDKAVLYRMHPRNVGCVSSARIDCCVLANNHSLDWGREGLADTLDTLRRAGIRTAGAGD DDAHAARPATLGVAPGRRVLVYAYAAETSGVPPSWAATPRRGGLNYLADLSSGRATQIGERIAAQRREGDLVVVSLHWGG NWGFEIGDDEHAFAHRLIDTGAADIVYGHSSHHVKGIEIYRERLILYGCGDCLNDYEGIHGHQPFRPDLALMYFPVLDAG SGALVELSAVPMQIRNLRLQRAPADGKAWLHAVLERESRRFGTHVSACDVDGLHVHW >Mature_377_residues MNETDDAPLHARVRLFLCGDVMTGRGIDQILPHPGAPRLYERYCRSARDYVRLAERANGELPARVDCAYPWGDALAELDR VRPHVRIVNLETAITTSDARWPDKAVLYRMHPRNVGCVSSARIDCCVLANNHSLDWGREGLADTLDTLRRAGIRTAGAGD DDAHAARPATLGVAPGRRVLVYAYAAETSGVPPSWAATPRRGGLNYLADLSSGRATQIGERIAAQRREGDLVVVSLHWGG NWGFEIGDDEHAFAHRLIDTGAADIVYGHSSHHVKGIEIYRERLILYGCGDCLNDYEGIHGHQPFRPDLALMYFPVLDAG SGALVELSAVPMQIRNLRLQRAPADGKAWLHAVLERESRRFGTHVSACDVDGLHVHW
Specific function: Could be involved in the biosynthesis of a cell wall component (Potential) [H]
COG id: COG2843
COG function: function code M; Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CapA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019079 [H]
Pfam domain/function: PF09587 PGA_cap [H]
EC number: NA
Molecular weight: Translated: 41535; Mature: 41535
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNETDDAPLHARVRLFLCGDVMTGRGIDQILPHPGAPRLYERYCRSARDYVRLAERANGE CCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC LPARVDCAYPWGDALAELDRVRPHVRIVNLETAITTSDARWPDKAVLYRMHPRNVGCVSS CCCEEEECCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCC ARIDCCVLANNHSLDWGREGLADTLDTLRRAGIRTAGAGDDDAHAARPATLGVAPGRRVL CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEE VYAYAAETSGVPPSWAATPRRGGLNYLADLSSGRATQIGERIAAQRREGDLVVVSLHWGG EEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEEECC NWGFEIGDDEHAFAHRLIDTGAADIVYGHSSHHVKGIEIYRERLILYGCGDCLNDYEGIH CCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHEEEEEECCHHHHHCCCCC GHQPFRPDLALMYFPVLDAGSGALVELSAVPMQIRNLRLQRAPADGKAWLHAVLERESRR CCCCCCCCEEEEEEEEEECCCCCEEEEECCCHHHHHEEEECCCCCHHHHHHHHHHHHHHH FGTHVSACDVDGLHVHW HCCCCEEECCCCEEECC >Mature Secondary Structure MNETDDAPLHARVRLFLCGDVMTGRGIDQILPHPGAPRLYERYCRSARDYVRLAERANGE CCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC LPARVDCAYPWGDALAELDRVRPHVRIVNLETAITTSDARWPDKAVLYRMHPRNVGCVSS CCCEEEECCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCC ARIDCCVLANNHSLDWGREGLADTLDTLRRAGIRTAGAGDDDAHAARPATLGVAPGRRVL CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEE VYAYAAETSGVPPSWAATPRRGGLNYLADLSSGRATQIGERIAAQRREGDLVVVSLHWGG EEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEEECC NWGFEIGDDEHAFAHRLIDTGAADIVYGHSSHHVKGIEIYRERLILYGCGDCLNDYEGIH CCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHEEEEEECCHHHHHCCCCC GHQPFRPDLALMYFPVLDAGSGALVELSAVPMQIRNLRLQRAPADGKAWLHAVLERESRR CCCCCCCCEEEEEEEEEECCCCCEEEEECCCHHHHHEEEECCCCCHHHHHHHHHHHHHHH FGTHVSACDVDGLHVHW HCCCCEEECCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]