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The map label for this gene is araC [H]

Identifier: 53722041

GI number: 53722041

Start: 1393691

End: 1394737

Strand: Reverse

Name: araC [H]

Synonym: BPSS1020

Alternate gene names: 53722041

Gene position: 1394737-1393691 (Counterclockwise)

Preceding gene: 53722051

Following gene: 53722040

Centisome position: 43.96

GC content: 71.54

Gene sequence:

>1047_bases
ATGCCTTCCCCAGTCAAGCCGCGCACGTACGCCATGCCCGAGCGCAGCGATCGCCTCGATTTCTACATTCGCGACGAGGC
CGCCCGCCGGGCGATCACCGAGCCGCACCGGCATGCGTACTTCCAGATCCAGTTCAACCTCGGCGGCGACACCGAGCAGC
GCATCGGCGGGTTCACGCGAGCGTTCCCGCGCGGCGCGCTCGCGTTCGTGCTGCCGTACCGCGAGCACCTGATCGCGCAT
CCGCCGGGCGCGCACTTCGTCGTGATCAATTTCTCGCAAACGTTCCTGCGCGCCGATCTCGACGTCGATCCGCTCGATCT
CGAGGATGTCTGCGCGCAGCGCGCGCCCGAGCTTGCGCCGTTTCGCTTCCAGGAGCATCTGGACTTCATCCTGACCGGCG
CGGCATTCGACGACGCGCGCCGCCTCGCGCAGCGGATGCTAGAAGCCAACCGCGCGCGCACGTTCGGCTCGGTGCCGCTG
CTGCGCGGCTATCTGCTGCAGTTGATCGGGCTCGTCTGCACGCAATACGCGGGGCCGCTCACGAAGCTCGCCCAGAGCGG
CGCGCACCGCACGGGCCGCCGCGACGCGTTCGCGCGCGTGCTGCGCCACGTCCGCGCGAACCTGACGAACGACGCGCTCA
CGCTCGCGGGCACCGCGCGCGCGGCGTGCCTGTCGCCGAACTACCTCGCGCACCTGATCCGCAAGGAGACGGGCAGCACG
TTCACCGATCTCGTCACCGCGCGGCGGATCGCGCTTGCCCAATCGCTGCTCGCGCATACGACGCGGCGCATCGCCGACAT
CGCGCACGCGGTCGGGTTTCGCGACGAGGGCTATTTCTCGCGGCGCTTTCGCGCGTGCGTCGGCGTATCGCCGAAGGAGT
ATCGCGACGCGAACGGCGCGCCCGGCCCGGCCGATGCGCTCGATTCGGCCGATGCGCTCGATTCGGTCGATACGGCCGGG
CCGCGCGCCGCGCCCGGGGGCGGCGAAACGCGCGGCGCGGCCGGCGCGAAGAGCCCGGCGCGCGCGGCCGCGAAGCCGCG
CGCGTAG

Upstream 100 bases:

>100_bases
CCTCCCCTGCCCGCGCGTTTTTAGCGACAATTCGACCATTGCCCGTCGCGCCGCCGCGCGCGGCGGACCGCGCGACCCGC
ATCACGCTCACCGAACGCCC

Downstream 100 bases:

>100_bases
TTTTGTCCATGAAGACCCCACATTCGTCGCATCGGCGCGCGGGCGGCGCGGGTATCGTCGACGTGTCGACGGCGCGCGCC
GCCGCGCCCGCCCCGGCGCG

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MPSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAH
PPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPL
LRGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGST
FTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSADALDSVDTAG
PRAAPGGGETRGAAGAKSPARAAAKPRA

Sequences:

>Translated_348_residues
MPSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAH
PPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPL
LRGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGST
FTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSADALDSVDTAG
PRAAPGGGETRGAAGAKSPARAAAKPRA
>Mature_347_residues
PSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTRAFPRGALAFVLPYREHLIAHP
PGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLL
RGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTF
TDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSADALDSVDTAGP
RAAPGGGETRGAAGAKSPARAAAKPRA

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=94, Percent_Identity=37.2340425531915, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790391, Length=85, Percent_Identity=40, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38037; Mature: 37905

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTR
CCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHH
AFPRGALAFVLPYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAP
HCCCCCEEEEECHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCC
FRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
TKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGST
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCHHHHHHHHHHHCCCH
FTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCC
PGPADALDSADALDSVDTAGPRAAPGGGETRGAAGAKSPARAAAKPRA
CCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure 
PSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGFTR
CCCCCCCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHH
AFPRGALAFVLPYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAP
HCCCCCEEEEECHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCC
FRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
TKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGST
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCHHHHHHHHHHHCCCH
FTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCC
PGPADALDSADALDSVDTAGPRAAPGGGETRGAAGAKSPARAAAKPRA
CCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]