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The map label for this gene is rnk [H]

Identifier: 53721904

GI number: 53721904

Start: 1173890

End: 1174300

Strand: Reverse

Name: rnk [H]

Synonym: BPSS0880

Alternate gene names: 53721904

Gene position: 1174300-1173890 (Counterclockwise)

Preceding gene: 53721906

Following gene: 53721902

Centisome position: 37.01

GC content: 60.34

Gene sequence:

>411_bases
TTGGAGACTGTCATGAGAAACAGGATTTACCAACTCACCGAACTCGATGTCGCACGCCTCGAAAAGCATGCGGAACGCAA
CCCGCGCTATCAGGAAATGCTCGACACGCTGCTCGAGCGCGCCGATATCGTCGAGCCGAACAAGATTCAGGCAAACGTCG
TCACGATGAACTCGCAGATCAAGCTGCTCGACGAGACAGCCGGCCAGGACAGGGCCTGGACCATCGTCTATCCGGACGCG
GCCAATTTCGAGCAAGGCCGATTGAACGTGTTTTCGCCGGTCGGCATGGCGCTTCTCGGCTCGCGCTGCGGCGAGCGGGT
CAAAGTGACGCTGCCGGGCGGCGCGGACGCGACGCTGAAGATCGTCGAGATCGTCTATCAACCGGAAGCGAGCGGCGACT
ACGCGCACTAA

Upstream 100 bases:

>100_bases
CCGCGGCCCGGCGCTTGATCTGACGGCAGTCTCCATCCCGGAGCCGCGTCAGTCAGGCTCCGGGCAATCCCGGGTTGGCC
ACGCTACCCAAGCCGATCAT

Downstream 100 bases:

>100_bases
GGCCGCACGACGACGGATCGGCGGATGCGGCGCGGCCGCCGAACGATCGCCGGCCCGCGTGAGCGGCGACGAATCGGCAA
CGGCCGCCACGCCAAAGCGA

Product: transcription elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
METVMRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDA
ANFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVYQPEASGDYAH

Sequences:

>Translated_136_residues
METVMRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDA
ANFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVYQPEASGDYAH
>Mature_136_residues
METVMRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDA
ANFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVYQPEASGDYAH

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=128, Percent_Identity=38.28125, Blast_Score=89, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15290; Mature: 15290

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METVMRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCEE
KLLDETAGQDRAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLK
EEEECCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEEEECCCCCCCEE
IVEIVYQPEASGDYAH
EEEEEECCCCCCCCCC
>Mature Secondary Structure
METVMRNRIYQLTELDVARLEKHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCEE
KLLDETAGQDRAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLK
EEEECCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEEEECCCCCCCEE
IVEIVYQPEASGDYAH
EEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]