Click here to switch to the map view.

The map label for this gene is yhcS [C]

Identifier: 53721886

GI number: 53721886

Start: 1153177

End: 1154076

Strand: Reverse

Name: yhcS [C]

Synonym: BPSS0861

Alternate gene names: 53721886

Gene position: 1154076-1153177 (Counterclockwise)

Preceding gene: 53721899

Following gene: 53721880

Centisome position: 36.37

GC content: 71.0

Gene sequence:

>900_bases
ATGGATCGAATCACCGCGATGCAGGTGTTCGTCGAGACGGCCGAGCGCGGCAGCGTGTCGGCCGCCGCGCAGCATCTGGA
CATGTCGCGCGCGATGGCGTCGCGCTACGTCGCGTTCGTCGAGCAGTGGACCGGCGCGCGGCTGCTGCACCGAACCACGC
GGCGCCTCACGCTGACCGCCGCGGGCGCGCAGATGCTGCCGCTCTGCCGCGACATGCTCGGGCTCGCCGAGCATGTCGCC
ACCGTCGTCGCGGAGCCGGGCGATGCGCCGCGCGGCGCGCTGAGGATCACCGCCAGCGCGATCTTCGCGCAGACGCACGT
GACCGATGCCGTGCTCGACTACCTGGCCCGCTACCCGGCCGTGTCGGTCGACTTGCTCGTCACCGACCGTACCGCCGACC
TCGTCGACGAACGCATCGACCTGGCCATCCGGATCACGAACGCAGTCGACCCGAGCCTGATCGCGCGCCGGCTCGGCACG
TGCCGCTCGGCGCTGTGCGCGTCGCCCGGCTATCTGGCCGAGCATGGCGTGCCGAAGCGGCCGCATGATCTCACTCGGCA
CAACTGCCTGACGTATGCGTATTTCGGGCAGAGCCTGTGGCACCTGACGCGCGACGGCGAGCCGGCGACGGTGCCCGTGC
AGGGCAATCTGAGCGCGAACGACGCGCTCGTGCTGCTGCGCGCGGCGACCGCGGGCGGCGGCATCGCGCTGCTGCCGACA
TTCGCGGCCGCCGAGCCGATTCGCACGGGCGCGCTCGTGCGCGTGCTGCCCGACTGCGCGGCGCCCGAGCTCGGCATCTA
TGCGGTCTATGCATCGCGCAAGCAGATGCCGCTCGCGATGCGCACGATGATCGATTTCCTGGCGGATCGTTTCGGCGATA
CGCCCGCGTGGGACGCATGA

Upstream 100 bases:

>100_bases
CGTTCACTCAAGAAAAATGAAAGTGAAACGAGTCTATTCGATATCCAATCGATCAAATACAATGCACCAGTCGACAATTT
GTTGCATGGATTGAGCGAAT

Downstream 100 bases:

>100_bases
CGGCGCGACTTCGACGCGCCGCGCCGTAGCGCCGCCGCTCGGCAGCGGCGCGACCGGGCGGCCAGGCGAAGCTGGGCGAA
GCGGACGAAGCCGAACCCAG

Product: LysR family regulatory protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDRITAMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQMLPLCRDMLGLAEHVA
TVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDLLVTDRTADLVDERIDLAIRITNAVDPSLIARRLGT
CRSALCASPGYLAEHGVPKRPHDLTRHNCLTYAYFGQSLWHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT
FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLADRFGDTPAWDA

Sequences:

>Translated_299_residues
MDRITAMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQMLPLCRDMLGLAEHVA
TVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDLLVTDRTADLVDERIDLAIRITNAVDPSLIARRLGT
CRSALCASPGYLAEHGVPKRPHDLTRHNCLTYAYFGQSLWHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT
FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLADRFGDTPAWDA
>Mature_299_residues
MDRITAMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQMLPLCRDMLGLAEHVA
TVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDLLVTDRTADLVDERIDLAIRITNAVDPSLIARRLGT
CRSALCASPGYLAEHGVPKRPHDLTRHNCLTYAYFGQSLWHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT
FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLADRFGDTPAWDA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=33.5616438356164, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=35.0340136054422, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=31.3380281690141, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=31.0580204778157, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=31.5254237288136, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=28.169014084507, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=30.4794520547945, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1790011, Length=280, Percent_Identity=25, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789173, Length=269, Percent_Identity=26.7657992565056, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786713, Length=269, Percent_Identity=26.3940520446097, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32246; Mature: 32246

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRITAMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEE
AGAQMLPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCC
VSVDLLVTDRTADLVDERIDLAIRITNAVDPSLIARRLGTCRSALCASPGYLAEHGVPKR
CEEEEEEECCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCC
PHDLTRHNCLTYAYFGQSLWHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT
CCHHHHHCCEEHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEH
FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLADRFGDTPAWDA
HHHCCCHHCCHHHEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDRITAMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEE
AGAQMLPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCC
VSVDLLVTDRTADLVDERIDLAIRITNAVDPSLIARRLGTCRSALCASPGYLAEHGVPKR
CEEEEEEECCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCC
PHDLTRHNCLTYAYFGQSLWHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT
CCHHHHHCCEEHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEH
FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLADRFGDTPAWDA
HHHCCCHHCCHHHEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]