Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 53721541

GI number: 53721541

Start: 689358

End: 690323

Strand: Reverse

Name: glxA [H]

Synonym: BPSS0505

Alternate gene names: 53721541

Gene position: 690323-689358 (Counterclockwise)

Preceding gene: 53721543

Following gene: 53721540

Centisome position: 21.76

GC content: 71.22

Gene sequence:

>966_bases
ATGCGCCTGATCGTCTACATCCTCGTCTTTCCGGACCTGAATCTCCTCGACCTGTCGGGGCCGCTGCAGGTGCTGTCGAG
CGCCAACGAGCTCTCGCGCGAAGCCGGCGCGGACGCGCCGTACGACATCCGCGTCGTCGCGCGCGGCGGGCGCAGCGTGC
GAACCTCGACGGGCATCTCGCTGTCGACGCAGCCGCTCGCGCCCATCGACGCGCCGGCGGATACGGTGATCGTCGCGGGC
GGCGCCGGCGTGGACGCGGCCGCGCGCTGCGCGGACACGCTCGCGTGGCTGCGCGCGCACGCGCGGCAGGCGCGGCGCGT
GGTGTCGATCTGCAACGGCGCGTTCCTGCTCGCCGCGTGCGGGCTGCTCGACGGCCGCCGCGCGGTCACGCACTGGCAAT
GCTGCGACGCGCTCGCGCGACGCCATCCCCGGGTGCGCGTCGAGCATGCGCCGATCTTCGTGCAGGACGGCCCGATCTGG
ACGTCCGCGGGCGTCACGGCCGGCATCGATCTGTGTCTGCGCCTCGTCTCGAACGACTGCGGCCATACGCTCGCGCTCGC
ACTCGCGCGGTATCTCGTGGTGTTCCTCGTGCGGCCCGGCAGTCAGGCGCAATTCAGCGAATCGATCGAGATGCAGAGCG
CGTCCGGGCAGTTCGCCGATCTCCATGCGTGGATTCGCCGCCACTTGCGCGCCGACCTGTCGGTGCCGACGCTCGCCGCT
CGCGTCAACATGAGCGAGCGCAGCTTCGTGCGCCATTACCGGAACGCGTTCGGCACGACGCCCGCGAAGGCGGTCGAGCG
CATCCGCGTCGAGACCGCGCGCAACCTGCTCGGCGAAACCGCGCTGCCCGTCAAGCAGATCGCGCAGCGCTGCGGATTCG
GCAGCGTCGCGACGCTGCGCAGGAGCTTCGCGCGCGCGTTCGATACGTCGCTGCACGAGTATCGCGAGCGGTTTCGCCAA
GCGTGA

Upstream 100 bases:

>100_bases
CGAGGCGACGGTGCGCATCGCCCCGCACGACAATCAGCGTAGCGCGCGACCGATTGGCGCTTATGCCAAACTGGTTGCAG
TTTCCGCCAACGCCTGAACC

Downstream 100 bases:

>100_bases
CGCGCGGCACGGCGCGTGGCGTGCACCCCGATCGATCGGACCTCGAAGCGATGCACGGCGCGGCGCGCCAGCGAACGCCC
GCGGCCGCGCCGCGCGCCGG

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MRLIVYILVFPDLNLLDLSGPLQVLSSANELSREAGADAPYDIRVVARGGRSVRTSTGISLSTQPLAPIDAPADTVIVAG
GAGVDAAARCADTLAWLRAHARQARRVVSICNGAFLLAACGLLDGRRAVTHWQCCDALARRHPRVRVEHAPIFVQDGPIW
TSAGVTAGIDLCLRLVSNDCGHTLALALARYLVVFLVRPGSQAQFSESIEMQSASGQFADLHAWIRRHLRADLSVPTLAA
RVNMSERSFVRHYRNAFGTTPAKAVERIRVETARNLLGETALPVKQIAQRCGFGSVATLRRSFARAFDTSLHEYRERFRQ
A

Sequences:

>Translated_321_residues
MRLIVYILVFPDLNLLDLSGPLQVLSSANELSREAGADAPYDIRVVARGGRSVRTSTGISLSTQPLAPIDAPADTVIVAG
GAGVDAAARCADTLAWLRAHARQARRVVSICNGAFLLAACGLLDGRRAVTHWQCCDALARRHPRVRVEHAPIFVQDGPIW
TSAGVTAGIDLCLRLVSNDCGHTLALALARYLVVFLVRPGSQAQFSESIEMQSASGQFADLHAWIRRHLRADLSVPTLAA
RVNMSERSFVRHYRNAFGTTPAKAVERIRVETARNLLGETALPVKQIAQRCGFGSVATLRRSFARAFDTSLHEYRERFRQ
A
>Mature_321_residues
MRLIVYILVFPDLNLLDLSGPLQVLSSANELSREAGADAPYDIRVVARGGRSVRTSTGISLSTQPLAPIDAPADTVIVAG
GAGVDAAARCADTLAWLRAHARQARRVVSICNGAFLLAACGLLDGRRAVTHWQCCDALARRHPRVRVEHAPIFVQDGPIW
TSAGVTAGIDLCLRLVSNDCGHTLALALARYLVVFLVRPGSQAQFSESIEMQSASGQFADLHAWIRRHLRADLSVPTLAA
RVNMSERSFVRHYRNAFGTTPAKAVERIRVETARNLLGETALPVKQIAQRCGFGSVATLRRSFARAFDTSLHEYRERFRQ
A

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=131, Percent_Identity=29.7709923664122, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34988; Mature: 34988

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIVYILVFPDLNLLDLSGPLQVLSSANELSREAGADAPYDIRVVARGGRSVRTSTGIS
CEEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCE
LSTQPLAPIDAPADTVIVAGGAGVDAAARCADTLAWLRAHARQARRVVSICNGAFLLAAC
ECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
GLLDGRRAVTHWQCCDALARRHPRVRVEHAPIFVQDGPIWTSAGVTAGIDLCLRLVSNDC
HHCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCEEECCCHHHHHHHHHHHHHCCC
GHTLALALARYLVVFLVRPGSQAQFSESIEMQSASGQFADLHAWIRRHLRADLSVPTLAA
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHH
RVNMSERSFVRHYRNAFGTTPAKAVERIRVETARNLLGETALPVKQIAQRCGFGSVATLR
HCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHH
RSFARAFDTSLHEYRERFRQA
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLIVYILVFPDLNLLDLSGPLQVLSSANELSREAGADAPYDIRVVARGGRSVRTSTGIS
CEEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCE
LSTQPLAPIDAPADTVIVAGGAGVDAAARCADTLAWLRAHARQARRVVSICNGAFLLAAC
ECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
GLLDGRRAVTHWQCCDALARRHPRVRVEHAPIFVQDGPIWTSAGVTAGIDLCLRLVSNDC
HHCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCEEECCCHHHHHHHHHHHHHCCC
GHTLALALARYLVVFLVRPGSQAQFSESIEMQSASGQFADLHAWIRRHLRADLSVPTLAA
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHH
RVNMSERSFVRHYRNAFGTTPAKAVERIRVETARNLLGETALPVKQIAQRCGFGSVATLR
HCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHH
RSFARAFDTSLHEYRERFRQA
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]