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The map label for this gene is yjiR [C]

Identifier: 53721486

GI number: 53721486

Start: 613963

End: 615297

Strand: Reverse

Name: yjiR [C]

Synonym: BPSS0449

Alternate gene names: 53721486

Gene position: 615297-613963 (Counterclockwise)

Preceding gene: 53721488

Following gene: 53721485

Centisome position: 19.39

GC content: 74.83

Gene sequence:

>1335_bases
ATGGCTCACGCCCGCTACAAGCGCCTCGTCGACACGCTCGCCGCCGATATCCGCTCGGGCCGCCTGCCGCCCGGCGCGCG
CCTGCCGACGCATCGCAAGCTCGCGGCGGCCGAGGGCCTCGCGCTCGTCACGGCGACGCGCGTCTACGCGGAGCTCGAGG
CAATGGGGCTCGTGAGCGGCGAGACCGGCCGCGGCACGTTCGTGCGGGAAACCGCGCTGCCGCGCGGGCTCGGCGTCGAC
CAGCACGCGAGCGCCGCCGGCGTCGTCGATCTCGCGTTCAACTATCCGTCGCTGCCCGAGCAGGCCGAGCTGCTGCGCGG
CGCGCTGCGCCAGCTTGCGTCGTCGGGCGATCTCGACGCGCTGCTGCGCTACCAGCCGCACGGCGGGCGGTGGCACGAGC
GCGCGTCGGTCGCCCGCCATCTCGCGCGCCGCGGGCTGTCGGTCGACGCGCAACGCGTCGCGATCGTCAACGGCGCGCAG
CACGGGCTCGCGGTGACCGCGATGGCGCTGCTGCGGCCGGGCGACGTCGTCGCCGTCGACGCGCTCACCTACCCCGGCTT
CAAGGTCGTCGCCGATGCGCAGCACCTCGAGCTCGCGCCGCTTCCGGCATCCGGCCAGGGCCCCGACCCCGACGCGCTCG
AGCGCCTTTGCAGGACGCGGCGCGTGCGCGCGGTGTACACGATGCCGACGCTGCACAATCCGCTCGGCTGGGTGACGAGC
GCGCACCGCCGGCGCCGGCTCGTCGCGATCGCGCGCCGCCACGGGCTGCTGATCATCGAGGACGGCGCGTATGCGTTCCT
CGCCGACGATCCGCCCGAGCCGATCGCCGCGCTCGCGCCGGAGGCTACCGTCTACGTGTCCGGGCTGTCGAAGAACGTCG
CGACCGGGCTGCGCGTCGGCTTCGTCGCGGCGCCCGAGCCGTGGGCGCCGGCGATCGAGCGCGCGATTCGGGGCACGACG
TGGAACACGCCCGGCGTGATGACGGCGATCGCCTGCGGCTGGCTCGACGACGGAACGGTCGAGCGGCTCGAGGCGGACAA
GCGCCGCGACGCCGCGGCGCGGCAGGCGATCGCGAGCGAAGCGTTCGCGGGGCTGCGCTGCATCCGCCATCCGGCTTCAT
ATTTCGTGTGGCTGCCGCTCGCCGACGACGCGCGCGCCGACCGGGTCGCGATGACGCTGATGCGCGAGCGGGTGGCGGTG
TCGACCGCCGAGCCGTTCGCGACGTCCGCGCACGCGCCGCACGCGATCCGCGTCGCGCTCGGGTCCGTCGATCCGCCGAC
GCTGCGCGACGCGCTCGGCAAGGTGCGACGGGCGATCGACGCGCATTCGTATTAG

Upstream 100 bases:

>100_bases
GGCGATATGCATGATGTCGTCTGCGTCGCGGATCGATTGCGATGCCGCATCGTATGACCGAGAATCAATACAATCAAATA
ATTGTCATGGATACATCGGC

Downstream 100 bases:

>100_bases
GACGTCCGCCGGCTCGCGCGCGGCCTCCGGCCGGCATCGGGGACGACATCGAACCGTCCGGCCGCCGACGGCGCGGCCGA
TAGCCGATAGCCGATAGCCG

Product: GntR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MAHARYKRLVDTLAADIRSGRLPPGARLPTHRKLAAAEGLALVTATRVYAELEAMGLVSGETGRGTFVRETALPRGLGVD
QHASAAGVVDLAFNYPSLPEQAELLRGALRQLASSGDLDALLRYQPHGGRWHERASVARHLARRGLSVDAQRVAIVNGAQ
HGLAVTAMALLRPGDVVAVDALTYPGFKVVADAQHLELAPLPASGQGPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTS
AHRRRRLVAIARRHGLLIIEDGAYAFLADDPPEPIAALAPEATVYVSGLSKNVATGLRVGFVAAPEPWAPAIERAIRGTT
WNTPGVMTAIACGWLDDGTVERLEADKRRDAAARQAIASEAFAGLRCIRHPASYFVWLPLADDARADRVAMTLMRERVAV
STAEPFATSAHAPHAIRVALGSVDPPTLRDALGKVRRAIDAHSY

Sequences:

>Translated_444_residues
MAHARYKRLVDTLAADIRSGRLPPGARLPTHRKLAAAEGLALVTATRVYAELEAMGLVSGETGRGTFVRETALPRGLGVD
QHASAAGVVDLAFNYPSLPEQAELLRGALRQLASSGDLDALLRYQPHGGRWHERASVARHLARRGLSVDAQRVAIVNGAQ
HGLAVTAMALLRPGDVVAVDALTYPGFKVVADAQHLELAPLPASGQGPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTS
AHRRRRLVAIARRHGLLIIEDGAYAFLADDPPEPIAALAPEATVYVSGLSKNVATGLRVGFVAAPEPWAPAIERAIRGTT
WNTPGVMTAIACGWLDDGTVERLEADKRRDAAARQAIASEAFAGLRCIRHPASYFVWLPLADDARADRVAMTLMRERVAV
STAEPFATSAHAPHAIRVALGSVDPPTLRDALGKVRRAIDAHSY
>Mature_443_residues
AHARYKRLVDTLAADIRSGRLPPGARLPTHRKLAAAEGLALVTATRVYAELEAMGLVSGETGRGTFVRETALPRGLGVDQ
HASAAGVVDLAFNYPSLPEQAELLRGALRQLASSGDLDALLRYQPHGGRWHERASVARHLARRGLSVDAQRVAIVNGAQH
GLAVTAMALLRPGDVVAVDALTYPGFKVVADAQHLELAPLPASGQGPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTSA
HRRRRLVAIARRHGLLIIEDGAYAFLADDPPEPIAALAPEATVYVSGLSKNVATGLRVGFVAAPEPWAPAIERAIRGTTW
NTPGVMTAIACGWLDDGTVERLEADKRRDAAARQAIASEAFAGLRCIRHPASYFVWLPLADDARADRVAMTLMRERVAVS
TAEPFATSAHAPHAIRVALGSVDPPTLRDALGKVRRAIDAHSY

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=217, Percent_Identity=24.4239631336406, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI33469970, Length=217, Percent_Identity=24.4239631336406, Blast_Score=72, Evalue=8e-13,
Organism=Escherichia coli, GI1790797, Length=466, Percent_Identity=25.3218884120172, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1787710, Length=451, Percent_Identity=25.2771618625277, Blast_Score=117, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21356535, Length=288, Percent_Identity=23.9583333333333, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 47629; Mature: 47498

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHARYKRLVDTLAADIRSGRLPPGARLPTHRKLAAAEGLALVTATRVYAELEAMGLVSG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHEECC
ETGRGTFVRETALPRGLGVDQHASAAGVVDLAFNYPSLPEQAELLRGALRQLASSGDLDA
CCCCCCEEEHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHH
LLRYQPHGGRWHERASVARHLARRGLSVDAQRVAIVNGAQHGLAVTAMALLRPGDVVAVD
HEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
ALTYPGFKVVADAQHLELAPLPASGQGPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTS
EECCCCEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHH
AHRRRRLVAIARRHGLLIIEDGAYAFLADDPPEPIAALAPEATVYVSGLSKNVATGLRVG
HHHHHHHHHHHHHCCEEEEECCCEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHCCEEE
FVAAPEPWAPAIERAIRGTTWNTPGVMTAIACGWLDDGTVERLEADKRRDAAARQAIASE
EEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AFAGLRCIRHPASYFVWLPLADDARADRVAMTLMRERVAVSTAEPFATSAHAPHAIRVAL
HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
GSVDPPTLRDALGKVRRAIDAHSY
CCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AHARYKRLVDTLAADIRSGRLPPGARLPTHRKLAAAEGLALVTATRVYAELEAMGLVSG
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHEECC
ETGRGTFVRETALPRGLGVDQHASAAGVVDLAFNYPSLPEQAELLRGALRQLASSGDLDA
CCCCCCEEEHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHH
LLRYQPHGGRWHERASVARHLARRGLSVDAQRVAIVNGAQHGLAVTAMALLRPGDVVAVD
HEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
ALTYPGFKVVADAQHLELAPLPASGQGPDPDALERLCRTRRVRAVYTMPTLHNPLGWVTS
EECCCCEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHH
AHRRRRLVAIARRHGLLIIEDGAYAFLADDPPEPIAALAPEATVYVSGLSKNVATGLRVG
HHHHHHHHHHHHHCCEEEEECCCEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHCCEEE
FVAAPEPWAPAIERAIRGTTWNTPGVMTAIACGWLDDGTVERLEADKRRDAAARQAIASE
EEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AFAGLRCIRHPASYFVWLPLADDARADRVAMTLMRERVAVSTAEPFATSAHAPHAIRVAL
HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
GSVDPPTLRDALGKVRRAIDAHSY
CCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]