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The map label for this gene is ycaC [H]

Identifier: 53721477

GI number: 53721477

Start: 602395

End: 603081

Strand: Reverse

Name: ycaC [H]

Synonym: BPSS0439

Alternate gene names: 53721477

Gene position: 603081-602395 (Counterclockwise)

Preceding gene: 53721485

Following gene: 53721475

Centisome position: 19.01

GC content: 64.48

Gene sequence:

>687_bases
ATGTCCGATCCGAAGCTCGAAGTCCTCACTCCGCACAACAGCCAGTTGATCTTCATCGACCAGCAGCCGCAAATGGCGTT
CGGCGTTCAGTCGATCGACCGCCAGACGCTGAAGAACAACGTCGTCGGCCTCGCGAAGGCCGCGAAGATCTTCAACGTCC
CGACGACGATCACGACGGTCGAATCCGAATCGTTCTCCGGCTTCACGTACCCGGAGCTGCTCGACGTGTACCCCGATCAC
AAGCTGCTCGAACGCTCGTCGATGAACTCGTGGGACGACCAGAAGGTGCGCGACGCGCTGAAGGCGAACGGCCGCAAGAA
GGTCGTCGTGTCGGGGCTGTGGACCGAGGTGTGCAACACGACGTTCGCGCTGTGCGCGATGGCCGAAGGCGGCTACGAGA
TCTACATGGTCGCCGACGCATCGGGCGGCACGAGCAAGGACGCGCACGACTACGCGATGCAGCGGATGATCCAGGCGGGC
GTCGTGCCCGTCACGTGGCAGCAGGTGCTGCTCGAGTGGCAGCGCGACTGGGCGCACCGCGACACGTACGACGCGGTGAT
GACGCTCGTGAAGGAGCACTCGGGCGCATACGGGATGGGTGTCGACTACGCGTACACGATGGTTCACAAGGCGGCGCAGC
GCACCGCGAACGCGCACGACATGCTTGCGCCCGTGCCGGCGCGCTGA

Upstream 100 bases:

>100_bases
TGCGCTCGCAAGCGATGCGCGACGATGGGCGCGCCTTCCGCGGTCGCCTCGCACTTCTTTCGTCAATCCCGCCTTGAACG
GCGTCACCCCGGAGACTGTC

Downstream 100 bases:

>100_bases
TCCTGCTCGAGCGTTCGGGCGCGGGCGCGTCGCGGCGGCGACGCGCCCGGCAATTCGCCAAGCGGCCGCGCGGCGGCTCA
CCCGTCCGCCCGCTCGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSDPKLEVLTPHNSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFNVPTTITTVESESFSGFTYPELLDVYPDH
KLLERSSMNSWDDQKVRDALKANGRKKVVVSGLWTEVCNTTFALCAMAEGGYEIYMVADASGGTSKDAHDYAMQRMIQAG
VVPVTWQQVLLEWQRDWAHRDTYDAVMTLVKEHSGAYGMGVDYAYTMVHKAAQRTANAHDMLAPVPAR

Sequences:

>Translated_228_residues
MSDPKLEVLTPHNSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFNVPTTITTVESESFSGFTYPELLDVYPDH
KLLERSSMNSWDDQKVRDALKANGRKKVVVSGLWTEVCNTTFALCAMAEGGYEIYMVADASGGTSKDAHDYAMQRMIQAG
VVPVTWQQVLLEWQRDWAHRDTYDAVMTLVKEHSGAYGMGVDYAYTMVHKAAQRTANAHDMLAPVPAR
>Mature_227_residues
SDPKLEVLTPHNSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFNVPTTITTVESESFSGFTYPELLDVYPDHK
LLERSSMNSWDDQKVRDALKANGRKKVVVSGLWTEVCNTTFALCAMAEGGYEIYMVADASGGTSKDAHDYAMQRMIQAGV
VPVTWQQVLLEWQRDWAHRDTYDAVMTLVKEHSGAYGMGVDYAYTMVHKAAQRTANAHDMLAPVPAR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=198, Percent_Identity=33.8383838383838, Blast_Score=114, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25420; Mature: 25289

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPKLEVLTPHNSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFNVPTTITTV
CCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ESESFSGFTYPELLDVYPDHKLLERSSMNSWDDQKVRDALKANGRKKVVVSGLWTEVCNT
CCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHH
TFALCAMAEGGYEIYMVADASGGTSKDAHDYAMQRMIQAGVVPVTWQQVLLEWQRDWAHR
HHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
DTYDAVMTLVKEHSGAYGMGVDYAYTMVHKAAQRTANAHDMLAPVPAR
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCC
>Mature Secondary Structure 
SDPKLEVLTPHNSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFNVPTTITTV
CCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ESESFSGFTYPELLDVYPDHKLLERSSMNSWDDQKVRDALKANGRKKVVVSGLWTEVCNT
CCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHH
TFALCAMAEGGYEIYMVADASGGTSKDAHDYAMQRMIQAGVVPVTWQQVLLEWQRDWAHR
HHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
DTYDAVMTLVKEHSGAYGMGVDYAYTMVHKAAQRTANAHDMLAPVPAR
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]