Click here to switch to the map view.

The map label for this gene is exbD1 [H]

Identifier: 53721401

GI number: 53721401

Start: 506662

End: 507084

Strand: Reverse

Name: exbD1 [H]

Synonym: BPSS0366

Alternate gene names: 53721401

Gene position: 507084-506662 (Counterclockwise)

Preceding gene: 53721402

Following gene: 53721399

Centisome position: 15.98

GC content: 63.36

Gene sequence:

>423_bases
ATGAACACCAGTTTCGGCGACGACGACGATGACGGCCTGATGAACGAGATCAACATGACGCCGCTCGTCGACGTCATGCT
CGTACTCCTGATCATTTTCCTCGTGACGATCCCGGCGATGCATCATGCGGTGAAGATCGACCTGCCGCGCGCGAGCAGTC
AGCCGGTCGAAGTGAAGCCCAAGACGATCGACGTCGCCATCGAAAGCGACGGCACGGTTCTGTGGGACGACCATCCGGTG
AGCGCGGCCGATCTGCAGGCGCGCATCGCTCAAGCCGCGCAGACGAACCCGCAGCCCGAGCTGCATCTGCGCGCGGATCG
CAAGGTCGCGTACGAACGCGTCGCGGAAGTGATGTCGGCGGCGCAGGCGGGCGGCCTGACGAAGCTCGGCTTCGTGACCG
AGCCGAAATCGAACGCGAAATAG

Upstream 100 bases:

>100_bases
CTGCATGCGTACTTCGTGACGGGCACGCGTCTCGCGTCGTCCCAGCGCGACGGGCTGCGCCTCGCCGCGCGCGCGAACTG
AGCGGAGGTTCGCGATGGCA

Downstream 100 bases:

>100_bases
CGCGCCGCGCGTGCGCCGCGTCCCGTATGCGGCGAGCGCGCGAAGCGCACACGAGCCGCAAAGTAAAAGGCCTTCATCGC
CAGATGAAGGCCTTTTTTCA

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEVKPKTIDVAIESDGTVLWDDHPV
SAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVMSAAQAGGLTKLGFVTEPKSNAK

Sequences:

>Translated_140_residues
MNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEVKPKTIDVAIESDGTVLWDDHPV
SAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVMSAAQAGGLTKLGFVTEPKSNAK
>Mature_140_residues
MNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEVKPKTIDVAIESDGTVLWDDHPV
SAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVMSAAQAGGLTKLGFVTEPKSNAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=132, Percent_Identity=34.0909090909091, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15170; Mature: 15170

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEVKP
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEECC
KTIDVAIESDGTVLWDDHPVSAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVMSA
CEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHH
AQAGGLTKLGFVTEPKSNAK
HHCCCCEECCEEECCCCCCC
>Mature Secondary Structure
MNTSFGDDDDDGLMNEINMTPLVDVMLVLLIIFLVTIPAMHHAVKIDLPRASSQPVEVKP
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEECC
KTIDVAIESDGTVLWDDHPVSAADLQARIAQAAQTNPQPELHLRADRKVAYERVAEVMSA
CEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHH
AQAGGLTKLGFVTEPKSNAK
HHCCCCEECCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]