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The map label for this gene is lsrR [H]

Identifier: 53721287

GI number: 53721287

Start: 340812

End: 341774

Strand: Reverse

Name: lsrR [H]

Synonym: BPSS0253

Alternate gene names: 53721287

Gene position: 341774-340812 (Counterclockwise)

Preceding gene: 53721288

Following gene: 53721280

Centisome position: 10.77

GC content: 67.6

Gene sequence:

>963_bases
ATGACGAACGAAGAACTCACGCAACTCGCAAAGTGCTATTACATCGACGGGTTGACGCAGGAAGAACTCGCGCAGAAGTT
CGCGATCTCGCGCCCGAAGGTGGGCCGGCTGCTCAAGCGCGCGATCGAAGAGGGCATCGTCGAGATTCGCGTGCGCCATC
ATCCGCGCGCGGTGCAGGATCTCGAACAGGAACTGGTCACGCGCTTCGGCATCCAGCGCGCGATCATCTCGGTCGACCAC
AAGGATCAGGACAGCCAGCGCGAGCTGCTCGCGGGGCTCGTCGCGAGCTACCTCGACCGCGTGCTCGCGGACGGGGCGAT
CGTCGCGGTCGGCATGGGCCGCAACGTGAGCGCGGTGTCGCGGCACGCGGTATCGACGACGCAGCGCAACTGCTCGTTCG
TTTCCGCGATCGGCGGCTCGTATCGCGGCGGCGAGACGATGAACGCCGACCACATCTGCCGGCGCCTCGCCGCGCGCTTC
GGCGGCGAGAGCGAGACGCTGTACGCGCCGGCGCTCGTCAATGATCCGCAGCTCTTCACCGCGCTGCTCGAGAACGACGT
CGTGCGCCAGTCGCTCGACAAGGCGCGCCGCGCGTCGATCGCGCTCGTCGGCATCGGCGACATTCTCGAGGACAGCAACA
TGGTCCGCATGGGCTGGTTCACGCCCGAGGAAATGGCCGAGGCAAAGCGCGCGGGCGCCGTCGGCGACATCATGGGCTAC
GACTTCATCGACATCCACGGCCGCCCGGCGACGACGATGCTGCACGGCCGCGTGATCGGGCTCACGCTCGAAGACCTGAA
GCGGATTCCGAACGTGATCGCGACCGCGAGCGAGCCGACGAAAGCCACGGGCATTCTCGGCGCGCTGCGCGCCGGCGTGA
TCAACACGCTCGCGACCACGCAGTCGATCGCGCAGACGGTGCTGAGCCTCGCGCAGGCCACCGAGACGGCGAGCGCGGCG
TAG

Upstream 100 bases:

>100_bases
GCCGACTACGAACGCCGGGCGGGCCTCACCCAGGCCGGCCCGAATGACGCGCACCGCGGTTCATGACGCCGCGCGGCGCG
CCGCTCCACTCGATCACGAC

Downstream 100 bases:

>100_bases
CGCGCGCTTCATGCGCCGGCCGCCCGCGCGAAACGGCCGGCGCACGCGCGCCGCGTGCGTCAGAACGTGTGACGCACGCC
GATGCGCACGAGCGTCTGCG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTNEELTQLAKCYYIDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQDLEQELVTRFGIQRAIISVDH
KDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVSRHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARF
GGESETLYAPALVNDPQLFTALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTPEEMAEAKRAGAVGDIMGY
DFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATTQSIAQTVLSLAQATETASAA

Sequences:

>Translated_320_residues
MTNEELTQLAKCYYIDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQDLEQELVTRFGIQRAIISVDH
KDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVSRHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARF
GGESETLYAPALVNDPQLFTALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTPEEMAEAKRAGAVGDIMGY
DFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATTQSIAQTVLSLAQATETASAA
>Mature_319_residues
TNEELTQLAKCYYIDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQDLEQELVTRFGIQRAIISVDHK
DQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVSRHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARFG
GESETLYAPALVNDPQLFTALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTPEEMAEAKRAGAVGDIMGYD
FIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATTQSIAQTVLSLAQATETASAA

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=319, Percent_Identity=29.153605015674, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87082414, Length=305, Percent_Identity=26.8852459016393, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34621; Mature: 34490

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNEELTQLAKCYYIDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQD
CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEHHCCCCHHHHH
LEQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVS
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
RHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARFGGESETLYAPALVNDPQLFT
HHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHH
ALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTPEEMAEAKRAGAVGDIMGY
HHHHHHHHHHHHHHHHHHCEEEEECHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHHCC
DFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATT
CEEEECCCCCHHEECCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QSIAQTVLSLAQATETASAA
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TNEELTQLAKCYYIDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQD
CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEHHCCCCHHHHH
LEQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVS
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
RHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARFGGESETLYAPALVNDPQLFT
HHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHH
ALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTPEEMAEAKRAGAVGDIMGY
HHHHHHHHHHHHHHHHHHCEEEEECHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHHCC
DFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATT
CEEEECCCCCHHEECCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QSIAQTVLSLAQATETASAA
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA