| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is cga [H]
Identifier: 53721180
GI number: 53721180
Start: 186668
End: 189283
Strand: Reverse
Name: cga [H]
Synonym: BPSS0144
Alternate gene names: 53721180
Gene position: 189283-186668 (Counterclockwise)
Preceding gene: 53721181
Following gene: 53721179
Centisome position: 5.97
GC content: 68.54
Gene sequence:
>2616_bases GTGCTGGTGGGCAGTCTGGCCGCGCTCGCGGGCGCGGCGGCCCTACCGGCGAATACTTCGGCCGCCGCCGAAGCATTCGG CTCGCCCGGCGCCGCGCCCGTGCGGGGCCCGGCGGCCAAGTCGTTCCTCGGCACGGCGGTCAACGGCGCATCGCGGGTGT ACTTCACCGGTTATCGCGGCATCCTGTCCGAGGTCTACTACCCGGTCCTCGATACGCCCGAGTCCGTCGACCTGCAGTTC CTCGTCGGCGACGCCGGCAAGACCTTCGTCGACGAAGAAAAGCAGCAGGCCTACTCGGCCGCGCAAACGGACACGCGCAC GATGAGCTGGCAGGTGACGACCGGCAACAGTTCGCACAACTGGCAAATTCGCAAGATCGTCTTCGCCGATCCGAACCACA ACGCGATCGTGCAGCGCGTCACGTTCACCGCGCTCAACGGCCGCAAGGTGGGCGACTTCAATCTCTACATGCTGTCCAAG CCGTACCTCGACAACGCCGGCGCCAACAATACCGCGCAAACGGTGTCCGGCAGCGGCGGCACCGCGCTCGTCGCGAATCA CAACAGCCGCTATTCGGCGCTCGTCGCGAGCCGCCCGTGGAAGGTGGTCAACGGCGTGGGCATGACGTCGAACGGCTTCG TCGGGCAGAGCGACGGCTGGACCGACCTGCTCGGCGGCACCGCCGACAAGACGATGGACTGGACCTTCTCGTCCGCGACC AACGGCAACGTCGCGCAGATGGGCTGGCTCGACCTCGGCGATCCGAGCGCGACGAGCGTGTCGTTCGACGTCGTGCTCGG CTTCGGCGGCACGCAGGACCAGGCGCTCGGCGACGCGAACACGGTGCTCGGCAGCGATCTCGCCGGCGAGCAGCAGCAGT ACGACACCGGGTGGCATAACTACGCGGCGGGCCTGTCGTCGCAGAACGGCGCCGCGGACGACGGCTACTACCTGGCCGCG ATGACGCTCAAGACGATGCAGGACAAGAGCAACGGCGCGATGATCGCCGGCATCGGCACGCCGTGGGGCGAAACGCAGGG CGATGCGAACGCGGGCGGCTATCACCTCGTGTGGCCGCGCGACCTGTTCAAGTTCGCGAACGCGCTGACGACGGCGGGCG ACACGTCGAGCGCGACGAGCGTCGTCAACTACCTGTTCAACACGCTGCAGCAGACAACCGATTGCGGCACCGCCGAATAC AACGCGCCCGGCTGCGCGCAGGGCTACAGCCGCGTCGGGCGCTTTCCGCAGAACGCATGGGTGAACGGCTGGCCGTACTG GCAGGGCACGCAGATGGACGAGCAGGCGATGCCGATCATCCTCGCGTGGCGCCTCGGCCCGAGCGTGTTCAATCCGCTGT GGCCGAAGATCAAGCTCACCGCCGACTACATCGTCAATACCGGCCCCTGGACGTACCAGGAGCGCTGGGAGGAGAACGCC GGCTATTCGCCGTCGACGATCGCCGCCGAGATCGCGGGCCTCGTCACGGCGGCCGATATCGCGACGCAAAACGGCGACAC GGCGAGCGCCGCGCGCTACCTCGCCGCGGCCGACTACTGGCAGGAGAACGTCGCGGCGTGGACGTACACGTCGAGCGGCG CGTTCGGCAACGGCAGCTACTACATCCGGATCAATCCGGCGGGCCGCGCGGGCACCGGCACCGACCGCGCGAGCTTCGCG CCGACCGCCGGCCCCGACACGCCGCAGACGCTGAGCGTGAAGAACGGCGGCGGCAGCCACGACGCGCGGCGCGTCGTCGA CGGCGGCTTCTTCGAGCTCGTCCGGATGGGGGTCAAGCGCGCGACCGATCCGACGATCGCCAACACGATCTCGGTCTACG ACAGCGTGCTCGGCCAGACGCTGAACGTCGCGAACGCGCCGGCGCTGTCGCCGAACGCGTGGTTCCGCTACAACTTCGAC GGCTACGGCGAGCACAACGACGGCGGCGATTTCGACGGCACCGGCGCCGGCCGGCTGTGGCCGATCTTCACCGCCGAGCG CGGCATGGTCGAGATCGCGCGCCAGGGCAGCGGCGGCGCGGGCAGCGCGTACTTCTCGACGCTCAAGCAATTGACGACGC CCGAGGGCTTCGTGCCGGAGCAGGTGTGGTCGAATTCGACGACGCTGCCCGACGGCTGGGCGGTGACGACGCCCGCGGGC TACACGCCGGGCCAGCCGACCAAATCGATGGCGCCGCTCAACTGGGCGATGGGCGAATACATCAGCCTGCTCGCGTCGAT CCAGGCGGGGCGCATCGTCGACGTGCCGTCGGTGGTCTGCGCGCGCTACAACAACTGCGCCGCGCCGCCGCAAAGCGGGC AGGTGCCGGTGGCCGTCAACGTGAACGCGAGCACGCAGCTCGGCCAGCAGATGTACGTGACAGGCAACGTCGCCGCGCTC GGCAATTGGAACACCGATCTCGGCATTCCGGTCGATCCGGCCAGCTACCCGGTGTGGCGCAACACCGTCAACCTGCCGGC CGCTCAGGCGATCCAGTACAAGTACTACCGGAAGAACGCGGACGGCAGCGTGACGTGGGAGAACCGTTCCGGCAACCGCC AGCTTCAGACGCCCGCGAGCGGCACGTTGGCGCTGAACGATCAGGTGAGCTGGTGA
Upstream 100 bases:
>100_bases GAGATACAGCGGATGTTGTTTTGCTACAAGAATCACAACAGACGCATTCATAACGGAGACGAAAAAAATGTCGGCAAGGC ACTTCGGATTCAAGCAGGCG
Downstream 100 bases:
>100_bases TGACGCCGCGCATGCGCTGGATCGCGCTCGCGGCGGCGACGCTGCTGGGCGCGGCGGCGGCGGGCGGGCGGGCGCGGCCG CCGACGGCCCGGGATGCGGC
Product: amylase
Products: NA
Alternate protein names: 1,4-alpha-D-glucan glucohydrolase; Glucan 1,4-alpha-glucosidase [H]
Number of amino acids: Translated: 871; Mature: 871
Protein sequence:
>871_residues MLVGSLAALAGAAALPANTSAAAEAFGSPGAAPVRGPAAKSFLGTAVNGASRVYFTGYRGILSEVYYPVLDTPESVDLQF LVGDAGKTFVDEEKQQAYSAAQTDTRTMSWQVTTGNSSHNWQIRKIVFADPNHNAIVQRVTFTALNGRKVGDFNLYMLSK PYLDNAGANNTAQTVSGSGGTALVANHNSRYSALVASRPWKVVNGVGMTSNGFVGQSDGWTDLLGGTADKTMDWTFSSAT NGNVAQMGWLDLGDPSATSVSFDVVLGFGGTQDQALGDANTVLGSDLAGEQQQYDTGWHNYAAGLSSQNGAADDGYYLAA MTLKTMQDKSNGAMIAGIGTPWGETQGDANAGGYHLVWPRDLFKFANALTTAGDTSSATSVVNYLFNTLQQTTDCGTAEY NAPGCAQGYSRVGRFPQNAWVNGWPYWQGTQMDEQAMPIILAWRLGPSVFNPLWPKIKLTADYIVNTGPWTYQERWEENA GYSPSTIAAEIAGLVTAADIATQNGDTASAARYLAAADYWQENVAAWTYTSSGAFGNGSYYIRINPAGRAGTGTDRASFA PTAGPDTPQTLSVKNGGGSHDARRVVDGGFFELVRMGVKRATDPTIANTISVYDSVLGQTLNVANAPALSPNAWFRYNFD GYGEHNDGGDFDGTGAGRLWPIFTAERGMVEIARQGSGGAGSAYFSTLKQLTTPEGFVPEQVWSNSTTLPDGWAVTTPAG YTPGQPTKSMAPLNWAMGEYISLLASIQAGRIVDVPSVVCARYNNCAAPPQSGQVPVAVNVNASTQLGQQMYVTGNVAAL GNWNTDLGIPVDPASYPVWRNTVNLPAAQAIQYKYYRKNADGSVTWENRSGNRQLQTPASGTLALNDQVSW
Sequences:
>Translated_871_residues MLVGSLAALAGAAALPANTSAAAEAFGSPGAAPVRGPAAKSFLGTAVNGASRVYFTGYRGILSEVYYPVLDTPESVDLQF LVGDAGKTFVDEEKQQAYSAAQTDTRTMSWQVTTGNSSHNWQIRKIVFADPNHNAIVQRVTFTALNGRKVGDFNLYMLSK PYLDNAGANNTAQTVSGSGGTALVANHNSRYSALVASRPWKVVNGVGMTSNGFVGQSDGWTDLLGGTADKTMDWTFSSAT NGNVAQMGWLDLGDPSATSVSFDVVLGFGGTQDQALGDANTVLGSDLAGEQQQYDTGWHNYAAGLSSQNGAADDGYYLAA MTLKTMQDKSNGAMIAGIGTPWGETQGDANAGGYHLVWPRDLFKFANALTTAGDTSSATSVVNYLFNTLQQTTDCGTAEY NAPGCAQGYSRVGRFPQNAWVNGWPYWQGTQMDEQAMPIILAWRLGPSVFNPLWPKIKLTADYIVNTGPWTYQERWEENA GYSPSTIAAEIAGLVTAADIATQNGDTASAARYLAAADYWQENVAAWTYTSSGAFGNGSYYIRINPAGRAGTGTDRASFA PTAGPDTPQTLSVKNGGGSHDARRVVDGGFFELVRMGVKRATDPTIANTISVYDSVLGQTLNVANAPALSPNAWFRYNFD GYGEHNDGGDFDGTGAGRLWPIFTAERGMVEIARQGSGGAGSAYFSTLKQLTTPEGFVPEQVWSNSTTLPDGWAVTTPAG YTPGQPTKSMAPLNWAMGEYISLLASIQAGRIVDVPSVVCARYNNCAAPPQSGQVPVAVNVNASTQLGQQMYVTGNVAAL GNWNTDLGIPVDPASYPVWRNTVNLPAAQAIQYKYYRKNADGSVTWENRSGNRQLQTPASGTLALNDQVSW >Mature_871_residues MLVGSLAALAGAAALPANTSAAAEAFGSPGAAPVRGPAAKSFLGTAVNGASRVYFTGYRGILSEVYYPVLDTPESVDLQF LVGDAGKTFVDEEKQQAYSAAQTDTRTMSWQVTTGNSSHNWQIRKIVFADPNHNAIVQRVTFTALNGRKVGDFNLYMLSK PYLDNAGANNTAQTVSGSGGTALVANHNSRYSALVASRPWKVVNGVGMTSNGFVGQSDGWTDLLGGTADKTMDWTFSSAT NGNVAQMGWLDLGDPSATSVSFDVVLGFGGTQDQALGDANTVLGSDLAGEQQQYDTGWHNYAAGLSSQNGAADDGYYLAA MTLKTMQDKSNGAMIAGIGTPWGETQGDANAGGYHLVWPRDLFKFANALTTAGDTSSATSVVNYLFNTLQQTTDCGTAEY NAPGCAQGYSRVGRFPQNAWVNGWPYWQGTQMDEQAMPIILAWRLGPSVFNPLWPKIKLTADYIVNTGPWTYQERWEENA GYSPSTIAAEIAGLVTAADIATQNGDTASAARYLAAADYWQENVAAWTYTSSGAFGNGSYYIRINPAGRAGTGTDRASFA PTAGPDTPQTLSVKNGGGSHDARRVVDGGFFELVRMGVKRATDPTIANTISVYDSVLGQTLNVANAPALSPNAWFRYNFD GYGEHNDGGDFDGTGAGRLWPIFTAERGMVEIARQGSGGAGSAYFSTLKQLTTPEGFVPEQVWSNSTTLPDGWAVTTPAG YTPGQPTKSMAPLNWAMGEYISLLASIQAGRIVDVPSVVCARYNNCAAPPQSGQVPVAVNVNASTQLGQQMYVTGNVAAL GNWNTDLGIPVDPASYPVWRNTVNLPAAQAIQYKYYRKNADGSVTWENRSGNRQLQTPASGTLALNDQVSW
Specific function: CGA has typical kinetic properties for a glucoamylase, but this bacterial enzyme had higher isomaltose-hydrolyzing activity than other eukaryotic glucoamylases [H]
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 15 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR006425 - InterPro: IPR015220 - InterPro: IPR011013 - InterPro: IPR014718 - InterPro: IPR000165 - InterPro: IPR011613 [H]
Pfam domain/function: PF09137 Glucodextran_N; PF00723 Glyco_hydro_15 [H]
EC number: =3.2.1.3 [H]
Molecular weight: Translated: 92340; Mature: 92340
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS51166 CBM20
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVGSLAALAGAAALPANTSAAAEAFGSPGAAPVRGPAAKSFLGTAVNGASRVYFTGYRG CCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHH ILSEVYYPVLDTPESVDLQFLVGDAGKTFVDEEKQQAYSAAQTDTRTMSWQVTTGNSSHN HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC WQIRKIVFADPNHNAIVQRVTFTALNGRKVGDFNLYMLSKPYLDNAGANNTAQTVSGSGG EEEEEEEEECCCCCEEEEEEEEEEECCCEECCEEEEEEECCCCCCCCCCCCCEEECCCCC TALVANHNSRYSALVASRPWKVVNGVGMTSNGFVGQSDGWTDLLGGTADKTMDWTFSSAT EEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCC NGNVAQMGWLDLGDPSATSVSFDVVLGFGGTQDQALGDANTVLGSDLAGEQQQYDTGWHN CCCEEEECEEECCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCHHHHCCCHHH YAAGLSSQNGAADDGYYLAAMTLKTMQDKSNGAMIAGIGTPWGETQGDANAGGYHLVWPR HHCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEECHH DLFKFANALTTAGDTSSATSVVNYLFNTLQQTTDCGTAEYNAPGCAQGYSRVGRFPQNAW HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC VNGWPYWQGTQMDEQAMPIILAWRLGPSVFNPLWPKIKLTADYIVNTGPWTYQERWEENA CCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHCC GYSPSTIAAEIAGLVTAADIATQNGDTASAARYLAAADYWQENVAAWTYTSSGAFGNGSY CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE YIRINPAGRAGTGTDRASFAPTAGPDTPQTLSVKNGGGSHDARRVVDGGFFELVRMGVKR EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCHHHHHHHHHHHH ATDPTIANTISVYDSVLGQTLNVANAPALSPNAWFRYNFDGYGEHNDGGDFDGTGAGRLW CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE PIFTAERGMVEIARQGSGGAGSAYFSTLKQLTTPEGFVPEQVWSNSTTLPDGWAVTTPAG EEEECCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEECCCCC YTPGQPTKSMAPLNWAMGEYISLLASIQAGRIVDVPSVVCARYNNCAAPPQSGQVPVAVN CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHCCCCCCCCCCCCEEEEEE VNASTQLGQQMYVTGNVAALGNWNTDLGIPVDPASYPVWRNTVNLPAAQAIQYKYYRKNA CCCCHHCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEEECC DGSVTWENRSGNRQLQTPASGTLALNDQVSW CCEEEECCCCCCCEEECCCCCEEEECCCCCC >Mature Secondary Structure MLVGSLAALAGAAALPANTSAAAEAFGSPGAAPVRGPAAKSFLGTAVNGASRVYFTGYRG CCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHH ILSEVYYPVLDTPESVDLQFLVGDAGKTFVDEEKQQAYSAAQTDTRTMSWQVTTGNSSHN HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC WQIRKIVFADPNHNAIVQRVTFTALNGRKVGDFNLYMLSKPYLDNAGANNTAQTVSGSGG EEEEEEEEECCCCCEEEEEEEEEEECCCEECCEEEEEEECCCCCCCCCCCCCEEECCCCC TALVANHNSRYSALVASRPWKVVNGVGMTSNGFVGQSDGWTDLLGGTADKTMDWTFSSAT EEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCC NGNVAQMGWLDLGDPSATSVSFDVVLGFGGTQDQALGDANTVLGSDLAGEQQQYDTGWHN CCCEEEECEEECCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCHHHHCCCHHH YAAGLSSQNGAADDGYYLAAMTLKTMQDKSNGAMIAGIGTPWGETQGDANAGGYHLVWPR HHCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEECHH DLFKFANALTTAGDTSSATSVVNYLFNTLQQTTDCGTAEYNAPGCAQGYSRVGRFPQNAW HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC VNGWPYWQGTQMDEQAMPIILAWRLGPSVFNPLWPKIKLTADYIVNTGPWTYQERWEENA CCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHCC GYSPSTIAAEIAGLVTAADIATQNGDTASAARYLAAADYWQENVAAWTYTSSGAFGNGSY CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE YIRINPAGRAGTGTDRASFAPTAGPDTPQTLSVKNGGGSHDARRVVDGGFFELVRMGVKR EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCHHHHHHHHHHHH ATDPTIANTISVYDSVLGQTLNVANAPALSPNAWFRYNFDGYGEHNDGGDFDGTGAGRLW CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE PIFTAERGMVEIARQGSGGAGSAYFSTLKQLTTPEGFVPEQVWSNSTTLPDGWAVTTPAG EEEECCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEECCCCC YTPGQPTKSMAPLNWAMGEYISLLASIQAGRIVDVPSVVCARYNNCAAPPQSGQVPVAVN CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHCCCCCCCCCCCCEEEEEE VNASTQLGQQMYVTGNVAALGNWNTDLGIPVDPASYPVWRNTVNLPAAQAIQYKYYRKNA CCCCHHCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEEECC DGSVTWENRSGNRQLQTPASGTLALNDQVSW CCEEEECCCCCCCEEECCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1633799 [H]