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The map label for this gene is ybiR [H]

Identifier: 53721011

GI number: 53721011

Start: 4041903

End: 4043054

Strand: Reverse

Name: ybiR [H]

Synonym: BPSL3404

Alternate gene names: 53721011

Gene position: 4043054-4041903 (Counterclockwise)

Preceding gene: 53721012

Following gene: 53721010

Centisome position: 99.23

GC content: 67.19

Gene sequence:

>1152_bases
TTGCCGCTTGACCGCGCCGTGTCGAATTCGGTCGTCGGGCGCGCGCCCGCGCGGATCATCGCGTTCGTCCGGCACGAGCC
GGTTCTCTCGATTCTCGTCGCGGCGCTGATTGCGCTGCAGGCCGTGCATTCTCTATCGGCAATCGCGCTCGTGCGGCTCG
TCGACTGGCAGACCGTCGCGACGCTCGCCGGTCTGCTGATGCTCACGAAGGCGCTGGAGCTGTCGGGCTTCCTGATGTGG
CTCGCGCACCGCATCGTCCATCGCGTGCGCTCCGAGCGTGCGCTTGCCGCGCTGCTCGTCGTGTTCGCGGCGGCGTTGTC
CGTATGGCTCACGAACGACGTGGCGCTTTTCGTCGTGATTCCGCTCGTACTGTCGCTGCGCGAGCTGACGCCGTTGCCGT
TCAAGCGCCTCGTGATCTACATCGCGCTCGCGGTGAACGCGGGTGCGATCGCGACGCCGCTCGGCAATCCGCAAAATCTC
TTTCTATGGCAATTGAGCGGCGTCTCGTTCGGCCGTTTCGTGATCGCGCTCGGGCCGCTCGCGCTCGTGCTGATGGCGCT
GCTGCTCGCGATGGTCGTCTTTGCGTTCGACGGCCGGCCGCTCGATCTGTCGAGGGACTCCACCGAGCGGCCGGTCGATC
GTGCGCAGGCGTTCGCGACGGTCGCGATGTTCGCCGGCTTCGTGCTGCTCGCGGACGCGCATCACGCGCTTGCCGGCGTG
CTCGCGGTGGCGGCGGTCTTTCTGATCGTCCGGCGCGACGCGGTGCTGAAGATCGACTGGCTTCTGCTGCTGATCTTCGT
GCTGATGTTCATCGTGTTGCGCAGCGCGGCATCGCTGCCGGCCGTCCATCAGGCAATCGCCGGCATCGGTCTCGACACGC
CGCTGCGCGCGTATGCGGCGGGCGCGCTGCTGTCGCAGATCATCAGCAACGTGCCGGCCGCGATCCTCCTGTCGGAGTTC
ACGCATGACTGGCGTGCGCTCGCGTTCGGCGTGAGCGTCGGCGGCTTCGGCATCGCGTTCGGTTCGCTCGCCAACCTGAT
CGCCATCCGGCTGTCCCGCGCGCGCGGGATGTGGTTGCCGTTCCATCTCGCGAGCATCCCGTTCGGCATCGCGAGCGCCG
TGCTCGGCGCGCTGCTGCTGCATTATTTTTGA

Upstream 100 bases:

>100_bases
GTGAAGATCAAGGTCGGCCGTCGCGGGCGGGGCCAACTGACGATCGATTTCGGCGACCTCGACGCGCTCGAAGGTATCCT
CGCGCGGCTGCGCGGCAACG

Downstream 100 bases:

>100_bases
GCTGCGGCGCGCACCGGAACGGGGCAGGGCAACGGGCGTTCGACGCTCGCCGAGCGATCGAAAACACACACCTTACAACT
GTCATCGGACGCCAGAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MPLDRAVSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLLMLTKALELSGFLMW
LAHRIVHRVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNL
FLWQLSGVSFGRFVIALGPLALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGV
LAVAAVFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQIISNVPAAILLSEF
THDWRALAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLASIPFGIASAVLGALLLHYF

Sequences:

>Translated_383_residues
MPLDRAVSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLLMLTKALELSGFLMW
LAHRIVHRVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNL
FLWQLSGVSFGRFVIALGPLALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGV
LAVAAVFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQIISNVPAAILLSEF
THDWRALAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLASIPFGIASAVLGALLLHYF
>Mature_382_residues
PLDRAVSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLLMLTKALELSGFLMWL
AHRIVHRVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLF
LWQLSGVSFGRFVIALGPLALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGVL
AVAAVFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQIISNVPAAILLSEFT
HDWRALAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLASIPFGIASAVLGALLLHYF

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=327, Percent_Identity=40.3669724770642, Blast_Score=230, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40973; Mature: 40842

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLDRAVSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVA
CCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAGLLMLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAAALSVWLTNDVALFVVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
PLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGVSFGRFVIALGPL
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHH
ALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVAAVFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
GALLSQIISNVPAAILLSEFTHDWRALAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
FHLASIPFGIASAVLGALLLHYF
HHHHHCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
PLDRAVSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVA
CCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAGLLMLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAAALSVWLTNDVALFVVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
PLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGVSFGRFVIALGPL
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHH
ALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVAAVFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
GALLSQIISNVPAAILLSEFTHDWRALAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
FHLASIPFGIASAVLGALLLHYF
HHHHHCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]