Click here to switch to the map view.

The map label for this gene is xpsD [H]

Identifier: 53720957

GI number: 53720957

Start: 3969661

End: 3971037

Strand: Reverse

Name: xpsD [H]

Synonym: BPSL3347

Alternate gene names: 53720957

Gene position: 3971037-3969661 (Counterclockwise)

Preceding gene: 53720958

Following gene: 53720956

Centisome position: 97.46

GC content: 61.07

Gene sequence:

>1377_bases
ATGAGGCGGTATTGTGGGTTGATCGTGGCGTTGATGCTGTCCAGCGGTTGTCGAATTGCGGCCGGTGCGGTGCCGCCGCT
GCCGACCTTGCCAGTCGATGCGACGATTGGCACGTCGCCTGCGATTCAGATTCCCGCGGCGCCAGTGTCGACCCCGTTAA
AGCATGTGCCGGGCACGGCATTCGATCTGCGGTTCGTGACGGTCGCTCAGGTTGTCGATTTGATCTATCAGGATGCAATG
CATACGCCATACGTACTCGGGCCAGACGTGCTTGCTGACAATCGCCTCGTATCGTTTCGTCTCGATGACGCAGTGCGCGA
TGTACGTGCGGTCATGGTCGATTTTCTCGATTCGCTCGGCTTCCGCGTGACGACCAAGAACGGCGTCGATTACGTCGCGA
GAAAGGCTGCTGACAGTCGGGCGCGAGTCGATCAAGAGGTGTTCGTCTACCGGCCGCGCTACCGGAGCGCCGAATCGCTG
CGCAGTCTGGTCGAGCCGGTGATCGGCACGCGGTCGATGATTCCGATGTCCGCGATTGCTGCTACGCCGTCCGCTGTGAC
AAGTCCCGTTCAGGTTCCGGGCGCGCCGATCAGTACTGCGAGCGATGTTGCAGTTGCGCCGGCTGCTGCGGGTGTGCAGG
CGCGCGGTAACGAGCTGGTGATCGTCGGTTCGCGTGACGAAGTCGCGATGCTTCGGAAGCTGGTGCCCGATCTCGATACC
GCGCCGGGTGAGGTCGTCGTGCGCGGATGGGTGTATGAGGTGGCCAATACCGATTCGGCTAACTCGGCGTGGAGCATCGC
GGTTCGGCTGTTGAGCGGACAGCTCAGGCTTTCGAGCGGAGACACGTCGTCTGATGCAAGCGCGATGAGATTCACGGGGC
CGGGCGTTGACGCGGCGATATCCGCGCTAAACGCCGATTCGCGATTCAAGGTCGTCAGTTCGCCGCACGTGCGGATCGTC
TCGGGCGAACGCGTGCGGCTGAATGTTGGGCAACAGGTGCCGACGCAATCGAGCGTCAGCTATCAAGGGTCGAGCGGCAC
ACCAGTTCAGTCGATCACGTATCAGGATGCCGGCTTGATTTTCGACGTGGAACCGACCGTCATGCGCGATGTGATCGAGC
TGAAGGTGCGTGAGGAGATTTCCGATTTCGTCGCGACGAAAACCGGCGTCGACACGTCGCCGACGAAAAACACGCGTCAG
TTACAAACGGTCACGCGTTTGAAGGATGGCGAACTGGTGGTGCTCGGCGGGCTGATCCAGGATCGCGACGCGACGGCGCG
CAGTGGGTATTCGTGGCTGCCGAGCTTTTTCGATGGTCGTTCCAGCTCGAAGCAACGGACAGAGGTGTTGCTCGTGTTGC
AGGTTCAGCGAATCTGA

Upstream 100 bases:

>100_bases
GTGGGCAGGGGGCGCGTCTGACGGGTGAAGTTGACGGTAAGACGGTAGCGGGGTGGACGGGCGTGCAGACTGTAAAGACA
GAACAATACGGGGGCGCGAA

Downstream 100 bases:

>100_bases
ATGAGTCGGCGAATTTTATTTATCGTTACGTGTAACGGATATTTATTTTACGTTACTAGTAACGTAAAATAAGAACAATG
CCGATAAGGAGCAAGCGCCA

Product: putative bacteriophage-related lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MRRYCGLIVALMLSSGCRIAAGAVPPLPTLPVDATIGTSPAIQIPAAPVSTPLKHVPGTAFDLRFVTVAQVVDLIYQDAM
HTPYVLGPDVLADNRLVSFRLDDAVRDVRAVMVDFLDSLGFRVTTKNGVDYVARKAADSRARVDQEVFVYRPRYRSAESL
RSLVEPVIGTRSMIPMSAIAATPSAVTSPVQVPGAPISTASDVAVAPAAAGVQARGNELVIVGSRDEVAMLRKLVPDLDT
APGEVVVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIV
SGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRDVIELKVREEISDFVATKTGVDTSPTKNTRQ
LQTVTRLKDGELVVLGGLIQDRDATARSGYSWLPSFFDGRSSSKQRTEVLLVLQVQRI

Sequences:

>Translated_458_residues
MRRYCGLIVALMLSSGCRIAAGAVPPLPTLPVDATIGTSPAIQIPAAPVSTPLKHVPGTAFDLRFVTVAQVVDLIYQDAM
HTPYVLGPDVLADNRLVSFRLDDAVRDVRAVMVDFLDSLGFRVTTKNGVDYVARKAADSRARVDQEVFVYRPRYRSAESL
RSLVEPVIGTRSMIPMSAIAATPSAVTSPVQVPGAPISTASDVAVAPAAAGVQARGNELVIVGSRDEVAMLRKLVPDLDT
APGEVVVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIV
SGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRDVIELKVREEISDFVATKTGVDTSPTKNTRQ
LQTVTRLKDGELVVLGGLIQDRDATARSGYSWLPSFFDGRSSSKQRTEVLLVLQVQRI
>Mature_458_residues
MRRYCGLIVALMLSSGCRIAAGAVPPLPTLPVDATIGTSPAIQIPAAPVSTPLKHVPGTAFDLRFVTVAQVVDLIYQDAM
HTPYVLGPDVLADNRLVSFRLDDAVRDVRAVMVDFLDSLGFRVTTKNGVDYVARKAADSRARVDQEVFVYRPRYRSAESL
RSLVEPVIGTRSMIPMSAIAATPSAVTSPVQVPGAPISTASDVAVAPAAAGVQARGNELVIVGSRDEVAMLRKLVPDLDT
APGEVVVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIV
SGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRDVIELKVREEISDFVATKTGVDTSPTKNTRQ
LQTVTRLKDGELVVLGGLIQDRDATARSGYSWLPSFFDGRSSSKQRTEVLLVLQVQRI

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 48991; Mature: 48991

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRYCGLIVALMLSSGCRIAAGAVPPLPTLPVDATIGTSPAIQIPAAPVSTPLKHVPGTA
CCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCE
FDLRFVTVAQVVDLIYQDAMHTPYVLGPDVLADNRLVSFRLDDAVRDVRAVMVDFLDSLG
EEHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCC
FRVTTKNGVDYVARKAADSRARVDQEVFVYRPRYRSAESLRSLVEPVIGTRSMIPMSAIA
CEEEECCCHHHHHHHHCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
ATPSAVTSPVQVPGAPISTASDVAVAPAAAGVQARGNELVIVGSRDEVAMLRKLVPDLDT
CCCHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCC
APGEVVVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAI
CCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCEEEECCCCHHHHH
SALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLI
HHCCCCCCEEEECCCCEEEEECCEEEEECCCCCCCCCCCEECCCCCCCCEEEEECCCCEE
FDVEPTVMRDVIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQ
EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECEEC
DRDATARSGYSWLPSFFDGRSSSKQRTEVLLVLQVQRI
CCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MRRYCGLIVALMLSSGCRIAAGAVPPLPTLPVDATIGTSPAIQIPAAPVSTPLKHVPGTA
CCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCE
FDLRFVTVAQVVDLIYQDAMHTPYVLGPDVLADNRLVSFRLDDAVRDVRAVMVDFLDSLG
EEHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCC
FRVTTKNGVDYVARKAADSRARVDQEVFVYRPRYRSAESLRSLVEPVIGTRSMIPMSAIA
CEEEECCCHHHHHHHHCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
ATPSAVTSPVQVPGAPISTASDVAVAPAAAGVQARGNELVIVGSRDEVAMLRKLVPDLDT
CCCHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCC
APGEVVVRGWVYEVANTDSANSAWSIAVRLLSGQLRLSSGDTSSDASAMRFTGPGVDAAI
CCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCEEEECCCCHHHHH
SALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQSITYQDAGLI
HHCCCCCCEEEECCCCEEEEECCEEEEECCCCCCCCCCCEECCCCCCCCEEEEECCCCEE
FDVEPTVMRDVIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQ
EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECEEC
DRDATARSGYSWLPSFFDGRSSSKQRTEVLLVLQVQRI
CCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]