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The map label for this gene is intD [H]

Identifier: 53720954

GI number: 53720954

Start: 3966797

End: 3967651

Strand: Reverse

Name: intD [H]

Synonym: BPSL3344

Alternate gene names: 53720954

Gene position: 3967651-3966797 (Counterclockwise)

Preceding gene: 53720955

Following gene: 53720953

Centisome position: 97.38

GC content: 55.32

Gene sequence:

>855_bases
ATGACATTTGAGGAAATCGTCGGTATTTATTTGTCGGCCAAGGATCACCGCAGTAAGCAGCGAGATATGTACTCGTTGAA
GCGACTTCAGCCTTATTTCGGTGGGCGTGCGATCTCGGCATTGAAAAGGGTGGACGTTCGGAAGTACGTCGCGGTCCGTC
TTGCCGACGGTGTGCAAGAATCGACAGTCAAGCGAGAATTGAAATTTCTTTCGGCTGCTATTAATTTTGTCCGCCTCGAA
TGTGATTGCTCTGACTTGCCGAATCCGGCGCAGAGTCTCGGATTGAATGGCGGGGAACATCGGGTTAGATGGATATCGCG
CGCGGAAGCATCGGCGTTGATTCTTTCTGCCAGTGCCTATGCGAAGCGCCCACATTTGGCAAACTTCGTGCGCCTCGCGC
TCAGTACAGGGTGCAGAAAGAACGAGTTATTGGCGCTTGATTGGTGTCGGGTGGATTTCGAGCACTCATTCTTGCGTCTG
AACGCTGAGCATACGAAGAACGGCAAGCGTAGGGTGGTGCCACTGAATAGTGCGGCGCTGTCGGCGCTGAGAGATCAACG
GGATTGGGTTGAGCGGAAGTGTTCAGGTTCTGAATGGGTGTTTCCGGCGTGGTCAGGGAAGCGCATACAGACACTGCAGA
AAGGATTTAACGCGGCGTGCGCCCGCGTAGGCATCGAGAATTTCCGGATCCACGACCTGCGACATACTTTCGCGTCGTGG
CTGGTGATGGAGGGCGTCTCCCTGTACGTCGTGAAAGACCTGCTAGGGCACTCCTCGATCACCGTGACAGAGCGCTATGC
CCACCTGTCGCCGGATCAAGGGCGCGCGGCAGTACAGAAGCTCCTGCCGCTCTAG

Upstream 100 bases:

>100_bases
TATCGACGCGCGAGAATTAGGCCAATGTTGTAAATAGATTTAAGCATAGAATCGTAACTGTCGATATTCTGATGATTCAA
TAGCGCTAGAGGCGTTTGGA

Downstream 100 bases:

>100_bases
GGCGGCGGGCCAGATTGCAGAAACATAGCAAATTTGCTAACATGAAATTCGATTGGACGGTTGTCTATTACAACGAACGG
GTCAAGCGCGACGTTTTCGC

Product: putative bacteriophage integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTFEEIVGIYLSAKDHRSKQRDMYSLKRLQPYFGGRAISALKRVDVRKYVAVRLADGVQESTVKRELKFLSAAINFVRLE
CDCSDLPNPAQSLGLNGGEHRVRWISRAEASALILSASAYAKRPHLANFVRLALSTGCRKNELLALDWCRVDFEHSFLRL
NAEHTKNGKRRVVPLNSAALSALRDQRDWVERKCSGSEWVFPAWSGKRIQTLQKGFNAACARVGIENFRIHDLRHTFASW
LVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLPL

Sequences:

>Translated_284_residues
MTFEEIVGIYLSAKDHRSKQRDMYSLKRLQPYFGGRAISALKRVDVRKYVAVRLADGVQESTVKRELKFLSAAINFVRLE
CDCSDLPNPAQSLGLNGGEHRVRWISRAEASALILSASAYAKRPHLANFVRLALSTGCRKNELLALDWCRVDFEHSFLRL
NAEHTKNGKRRVVPLNSAALSALRDQRDWVERKCSGSEWVFPAWSGKRIQTLQKGFNAACARVGIENFRIHDLRHTFASW
LVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLPL
>Mature_283_residues
TFEEIVGIYLSAKDHRSKQRDMYSLKRLQPYFGGRAISALKRVDVRKYVAVRLADGVQESTVKRELKFLSAAINFVRLEC
DCSDLPNPAQSLGLNGGEHRVRWISRAEASALILSASAYAKRPHLANFVRLALSTGCRKNELLALDWCRVDFEHSFLRLN
AEHTKNGKRRVVPLNSAALSALRDQRDWVERKCSGSEWVFPAWSGKRIQTLQKGFNAACARVGIENFRIHDLRHTFASWL
VMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLPL

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=183, Percent_Identity=37.1584699453552, Blast_Score=114, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32104; Mature: 31973

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFEEIVGIYLSAKDHRSKQRDMYSLKRLQPYFGGRAISALKRVDVRKYVAVRLADGVQE
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
STVKRELKFLSAAINFVRLECDCSDLPNPAQSLGLNGGEHRVRWISRAEASALILSASAY
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHEEEEEHHHH
AKRPHLANFVRLALSTGCRKNELLALDWCRVDFEHSFLRLNAEHTKNGKRRVVPLNSAAL
HCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEEHHHCCCCCEEEEECCHHHH
SALRDQRDWVERKCSGSEWVFPAWSGKRIQTLQKGFNAACARVGIENFRIHDLRHTFASW
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLPL
HHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TFEEIVGIYLSAKDHRSKQRDMYSLKRLQPYFGGRAISALKRVDVRKYVAVRLADGVQE
CHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
STVKRELKFLSAAINFVRLECDCSDLPNPAQSLGLNGGEHRVRWISRAEASALILSASAY
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHEEEEEHHHH
AKRPHLANFVRLALSTGCRKNELLALDWCRVDFEHSFLRLNAEHTKNGKRRVVPLNSAAL
HCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEEHHHCCCCCEEEEECCHHHH
SALRDQRDWVERKCSGSEWVFPAWSGKRIQTLQKGFNAACARVGIENFRIHDLRHTFASW
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLPL
HHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]