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The map label for this gene is flhC [H]

Identifier: 53720920

GI number: 53720920

Start: 3929708

End: 3930259

Strand: Reverse

Name: flhC [H]

Synonym: BPSL3310

Alternate gene names: 53720920

Gene position: 3930259-3929708 (Counterclockwise)

Preceding gene: 53720921

Following gene: 53720919

Centisome position: 96.46

GC content: 63.77

Gene sequence:

>552_bases
ATGGCATCCAAGAGCGTAGTGGTCGAGGTCAAGGAGATCACCCTGGCGATCGAGCTGATCGAGCTGGGTGCGCGGCTGCA
ACTGCTCGAAGCCGAGACGAACCTGTCGCGCGATCGCCTGATCAAGCTCTACAAGGAATTGAAGGGCGTGTCGCCGCCGA
AGGGGATGCTGCCGTTTTCGACCGACTGGTTCATGACGTGGCAGCCGAACATTCATTCGTCGCTGTTCTATAACATCTAC
CGTTTCATGCGCGAGCACGGCGGCTGCGATTCGATCCAGTCGATCGTCAAGGCGTACCGGCTGTATCTCGAGCACGTCGG
GCTGTCGGACGACGAGGCGGTGCTGAGCCTCACGCGCGCGTGGACGCTCGTTCGCTTCTTCGATTCCGGCATGCTGCAGA
TGACGCCGTGCACCCGTTGCGGCGGACACTTCGTCGCACACGCACACGATCCGCACCACGGCTATGTGTGCGGCCTTTGC
CAGCCGCCGTCGCGCGCGGGCAAGACCCGCAAGGCCGCCGCGCAGGGCGACCAGGCCGCCATCGCCGCGTAG

Upstream 100 bases:

>100_bases
CCGCTGACCGGAAGGCCGCGCGCCGCGCCCGGGCGCATTGATGCATCAATCGAAATGGGCAATCGAATTGTTTGGTTGGT
GTAAATAGCGGAGGGCGACG

Downstream 100 bases:

>100_bases
GCGGCTTCGCCGGCCGGCCAGGCGAACGCGCGTTCGCCCGCGGCGGCCGCGCGCTTCGGGCGGCACGCCGCTCCTTTCCT
TCTGCTGGTTTACACCGGCG

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MASKSVVVEVKEITLAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIY
RFMREHGGCDSIQSIVKAYRLYLEHVGLSDDEAVLSLTRAWTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHHGYVCGLC
QPPSRAGKTRKAAAQGDQAAIAA

Sequences:

>Translated_183_residues
MASKSVVVEVKEITLAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIY
RFMREHGGCDSIQSIVKAYRLYLEHVGLSDDEAVLSLTRAWTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHHGYVCGLC
QPPSRAGKTRKAAAQGDQAAIAA
>Mature_182_residues
ASKSVVVEVKEITLAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIYR
FMREHGGCDSIQSIVKAYRLYLEHVGLSDDEAVLSLTRAWTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHHGYVCGLCQ
PPSRAGKTRKAAAQGDQAAIAA

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=171, Percent_Identity=59.6491228070175, Blast_Score=233, Evalue=7e-63,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 20450; Mature: 20319

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKSVVVEVKEITLAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFS
CCCCCEEEEHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWQPNIHSSLFYNIYRFMREHGGCDSIQSIVKAYRLYLEHVGLSDDEAVLSLTRA
CCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHHGYVCGLCQPPSRAGKTRKAAAQGDQAA
HHHHHHHHCCCEEECCCCCCCCCEEEECCCCCCCEEEECCCCCHHCCCCHHHHHCCCCCC
IAA
CCC
>Mature Secondary Structure 
ASKSVVVEVKEITLAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFS
CCCCEEEEHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWQPNIHSSLFYNIYRFMREHGGCDSIQSIVKAYRLYLEHVGLSDDEAVLSLTRA
CCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHHGYVCGLCQPPSRAGKTRKAAAQGDQAA
HHHHHHHHCCCEEECCCCCCCCCEEEECCCCCCCEEEECCCCCHHCCCCHHHHHCCCCCC
IAA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9287017 [H]