Click here to switch to the map view.

The map label for this gene is yraN [C]

Identifier: 53720884

GI number: 53720884

Start: 3890197

End: 3890631

Strand: Reverse

Name: yraN [C]

Synonym: BPSL3274

Alternate gene names: 53720884

Gene position: 3890631-3890197 (Counterclockwise)

Preceding gene: 53720886

Following gene: 53720883

Centisome position: 95.49

GC content: 74.48

Gene sequence:

>435_bases
TTGTGCCACGCGCGCGAGGCGAGCCCGGGAACGGGCGAACCCGAAGCCGCGCCGCGCGACAACTTTCCGAGGGAGGCCGG
GTCCAAGCGCGGGATCGGCGCCGCGTTCGAGACGCGCGCGCAGCGCTTTCTCGAGCGCGCGGGACTCGCGCTCGTCGCGC
GCAACGTGACCGTGCGCGGCGGCGAGATCGACCTCGTGATGCGCGAGCGCGACGGCACGCTCGTGTTCGTCGAAGTGCGC
GCACGCGCGAACAGCCGCTACGGCGGAGCGGCGGCGAGCATCGGCGCGCGCAAGCGCATGCGGCTTCTTCTCGCGGCGCA
CGCGTTCTGGGCGCGCACGGGCGGCGCGAACGCGTGCCGCTTCGACGTCGTCGCGTTCGAGGGCGGCCGGCTCGTGTGGC
TGCGCGACGCGTTCCGTGCCGACGACGCGGGTTAG

Upstream 100 bases:

>100_bases
GAGGGCGCCTGCCGGATAGTGCTGCGCCTGCGCGAGATCGAGGAGGGAAGTCATGACACGAAAGGCGCCCGCACGCGGCG
CAAACGGAAGAAGCTCCGCA

Downstream 100 bases:

>100_bases
CCTGTGTCGAGATGTAAGGAGATGCGGCGACGCTCGGGCGGCGGGGGCGGAGTGCGGTAAACTCGCCGCACTCACGATGC
CGCGCGACGCAGACCACGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MCHAREASPGTGEPEAAPRDNFPREAGSKRGIGAAFETRAQRFLERAGLALVARNVTVRGGEIDLVMRERDGTLVFVEVR
ARANSRYGGAAASIGARKRMRLLLAAHAFWARTGGANACRFDVVAFEGGRLVWLRDAFRADDAG

Sequences:

>Translated_144_residues
MCHAREASPGTGEPEAAPRDNFPREAGSKRGIGAAFETRAQRFLERAGLALVARNVTVRGGEIDLVMRERDGTLVFVEVR
ARANSRYGGAAASIGARKRMRLLLAAHAFWARTGGANACRFDVVAFEGGRLVWLRDAFRADDAG
>Mature_144_residues
MCHAREASPGTGEPEAAPRDNFPREAGSKRGIGAAFETRAQRFLERAGLALVARNVTVRGGEIDLVMRERDGTLVFVEVR
ARANSRYGGAAASIGARKRMRLLLAAHAFWARTGGANACRFDVVAFEGGRLVWLRDAFRADDAG

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=124, Percent_Identity=48.3870967741936, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y041_BURP1 (Q3JY95)

Other databases:

- EMBL:   CP000124
- RefSeq:   YP_331458.1
- ProteinModelPortal:   Q3JY95
- STRING:   Q3JY95
- GeneID:   3689402
- GenomeReviews:   CP000124_GR
- KEGG:   bpm:BURPS1710b_0041
- TIGR:   BURPS1710b_0041
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- ProtClustDB:   PRK14673
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 15573; Mature: 15573

Theoretical pI: Translated: 11.36; Mature: 11.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCHAREASPGTGEPEAAPRDNFPREAGSKRGIGAAFETRAQRFLERAGLALVARNVTVRG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECEEEEC
GEIDLVMRERDGTLVFVEVRARANSRYGGAAASIGARKRMRLLLAAHAFWARTGGANACR
CEEEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
FDVVAFEGGRLVWLRDAFRADDAG
EEEEEECCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MCHAREASPGTGEPEAAPRDNFPREAGSKRGIGAAFETRAQRFLERAGLALVARNVTVRG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECEEEEC
GEIDLVMRERDGTLVFVEVRARANSRYGGAAASIGARKRMRLLLAAHAFWARTGGANACR
CEEEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
FDVVAFEGGRLVWLRDAFRADDAG
EEEEEECCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA