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The map label for this gene is rnaSA [H]

Identifier: 53720566

GI number: 53720566

Start: 3529801

End: 3530232

Strand: Reverse

Name: rnaSA [H]

Synonym: BPSL2958

Alternate gene names: 53720566

Gene position: 3530232-3529801 (Counterclockwise)

Preceding gene: 53720567

Following gene: 53720565

Centisome position: 86.64

GC content: 65.51

Gene sequence:

>432_bases
ATGGCACGCAAGTGGCTCCGCAACGGCGCGCTCGCGTCCGTCTTCGCGATCGTCGCGATGGGCAACATCGGCGCTACGCC
GGGCAGTCTGGTTTCCGCCGCATACGCACGGGAAGCCGCCACGGTCGACGGGGCGGCGGCGCAGGTCGATACGATCCCCG
CATCCCGTTTGCCGCGCGAGGCAGCAACCACGCTCAGCCTGATCGCCGCGGGCGGTCCCTATCCGTACGGGAAAGACGGC
GCGGTATTCGGCAATTACGAACGGATCTTGCCGAAGATGCGGCGCGGCTATTACCACGAGTACACGGTGCCGACGCCGCG
CACCCGCAATCGCGGCGCGCGGCGCATCGTCTGCGGCGGCCCCTTGAGGCGCGTCGACAATTGTTATTACACCGGCGACC
ACTACAACAGTTTCAAACGTATCGTTGATTGA

Upstream 100 bases:

>100_bases
TTTCATTTTCCTAACGAGCATTGATTCCCGCGTGCATTAGCGCTACGCTTACGCCTTTCTTGGTCGTCAACTTATTGATT
TAACAGCGGGAACCTCGTTT

Downstream 100 bases:

>100_bases
CTTCGGAATAAGCGGCATGAGCGACAACACCTACGCGCGCGACACGTCGGCTGCGGCGGATCTGTTCGCGGCCGGCGACG
GCAACCTGTTCCAGCGCGTC

Product: putative exported ribonuclease

Products: NA

Alternate protein names: RNase Sa [H]

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MARKWLRNGALASVFAIVAMGNIGATPGSLVSAAYAREAATVDGAAAQVDTIPASRLPREAATTLSLIAAGGPYPYGKDG
AVFGNYERILPKMRRGYYHEYTVPTPRTRNRGARRIVCGGPLRRVDNCYYTGDHYNSFKRIVD

Sequences:

>Translated_143_residues
MARKWLRNGALASVFAIVAMGNIGATPGSLVSAAYAREAATVDGAAAQVDTIPASRLPREAATTLSLIAAGGPYPYGKDG
AVFGNYERILPKMRRGYYHEYTVPTPRTRNRGARRIVCGGPLRRVDNCYYTGDHYNSFKRIVD
>Mature_142_residues
ARKWLRNGALASVFAIVAMGNIGATPGSLVSAAYAREAATVDGAAAQVDTIPASRLPREAATTLSLIAAGGPYPYGKDGA
VFGNYERILPKMRRGYYHEYTVPTPRTRNRGARRIVCGGPLRRVDNCYYTGDHYNSFKRIVD

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 15527; Mature: 15396

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKWLRNGALASVFAIVAMGNIGATPGSLVSAAYAREAATVDGAAAQVDTIPASRLPRE
CCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCHH
AATTLSLIAAGGPYPYGKDGAVFGNYERILPKMRRGYYHEYTVPTPRTRNRGARRIVCGG
HHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECC
PLRRVDNCYYTGDHYNSFKRIVD
CHHHHCCEEECCCCHHHHHHHCC
>Mature Secondary Structure 
ARKWLRNGALASVFAIVAMGNIGATPGSLVSAAYAREAATVDGAAAQVDTIPASRLPRE
CCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCHH
AATTLSLIAAGGPYPYGKDGAVFGNYERILPKMRRGYYHEYTVPTPRTRNRGARRIVCGG
HHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECC
PLRRVDNCYYTGDHYNSFKRIVD
CHHHHCCEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3098582; 3118883; 1654932; 8396032; 9757110; 9819211; 11455593 [H]