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The map label for this gene is omlA [H]

Identifier: 53720550

GI number: 53720550

Start: 3513232

End: 3514056

Strand: Reverse

Name: omlA [H]

Synonym: BPSL2942

Alternate gene names: 53720550

Gene position: 3514056-3513232 (Counterclockwise)

Preceding gene: 53720552

Following gene: 53720549

Centisome position: 86.24

GC content: 72.24

Gene sequence:

>825_bases
ATGATTCCAAGATCGCTTTTGCAACTTCAGAGGAGCCGCGTGCGGAGCACCGTCATCGCAGCTGTCGCCGTGGTCGGACT
GGCCGCCTGTTCGTCGTACGACAGCGTGACCCAGCGGATCGCGCAGAGCATTACGCCGTATCGGATCACCGTCGTCCAGG
GCAACTTCGTGTCGCAGGAAAAGGCGTCGCAACTGCAGGTAGGCATGTCGCGCGAGCAGGTGCGCGCGCTGCTCGGCACG
CCGCTGCTGACCGACATGTTCCATGCGGATCGCTGGGATTACCTTTTCTACTTCAAGCGCGGCTCGACGTCGGTCGTCCA
GCAGCGCGATCTCGTGGTGAATTTCGCGGGCGATCGCCTCGCCGGCTGGTCGGGCGCCGAGAATCTGCCGTCCGAGCTCG
ATCTGCTCGCCGACATCGACGGCGATCGTCGCGGCAAGAAGGCGCGCGCAGCCGCGGCCGCGCGCGCCGCCTCCGCGCCC
GAAGCCGCCGCGGCGGCTCCCGAAGCCATGCAGGCGGCGGAGCAGAACGACGCGAACGCGCAGGCGGCGCGCGCGGCGAA
CCGCGCGACCGCGCAGGTGCCCGGTCAGAGCGGCGCGGCGTCCCGCTTCGCGCCTTCCGCGCAGATGGCGCCGAACGCGC
CGACGCCGGGCGGCCTGCCGCCCGGCGCCGCGCCCGCGATCCAGCCGCAGTTCCAGTTCCATCGCCCGCCTCCGCCGCCC
GCGCAGGGCGGCGCGAACCAGCCGGTCGGCCCGCAGGGCGCCGACGCGCTGCCGAACCAGCCGCTCACGGCGCCCGCGTC
CGGCGCGCAGGGAACGGGCGGCTGA

Upstream 100 bases:

>100_bases
AGAGTACAATGCAGGGCTTCAATAGTACCGGCTTTTCGCCTTTTCAGTCATCTGTGACATTCTCGCGCGGCCTTGGACAA
GGGCCAGCACGGTGAGGGAC

Downstream 100 bases:

>100_bases
TCCGGCAGTCCGAGCCTAACCAGGGGCGGCGCGCGCCGCCCGTCTTTCATTCGTAGCAAGCAGGTAGCGCATGTCGTCCA
TGAAGATTGCGATTGCTGGG

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MIPRSLLQLQRSRVRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQEKASQLQVGMSREQVRALLGT
PLLTDMFHADRWDYLFYFKRGSTSVVQQRDLVVNFAGDRLAGWSGAENLPSELDLLADIDGDRRGKKARAAAAARAASAP
EAAAAAPEAMQAAEQNDANAQAARAANRATAQVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPP
AQGGANQPVGPQGADALPNQPLTAPASGAQGTGG

Sequences:

>Translated_274_residues
MIPRSLLQLQRSRVRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQEKASQLQVGMSREQVRALLGT
PLLTDMFHADRWDYLFYFKRGSTSVVQQRDLVVNFAGDRLAGWSGAENLPSELDLLADIDGDRRGKKARAAAAARAASAP
EAAAAAPEAMQAAEQNDANAQAARAANRATAQVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPP
AQGGANQPVGPQGADALPNQPLTAPASGAQGTGG
>Mature_274_residues
MIPRSLLQLQRSRVRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQEKASQLQVGMSREQVRALLGT
PLLTDMFHADRWDYLFYFKRGSTSVVQQRDLVVNFAGDRLAGWSGAENLPSELDLLADIDGDRRGKKARAAAAARAASAP
EAAAAAPEAMQAAEQNDANAQAARAANRATAQVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPP
AQGGANQPVGPQGADALPNQPLTAPASGAQGTGG

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 28378; Mature: 28378

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPRSLLQLQRSRVRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCHH
KASQLQVGMSREQVRALLGTPLLTDMFHADRWDYLFYFKRGSTSVVQQRDLVVNFAGDRL
HHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHCCEEEEECCCCC
AGWSGAENLPSELDLLADIDGDRRGKKARAAAAARAASAPEAAAAAPEAMQAAEQNDANA
CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCHH
QAARAANRATAQVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPP
HHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AQGGANQPVGPQGADALPNQPLTAPASGAQGTGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIPRSLLQLQRSRVRSTVIAAVAVVGLAACSSYDSVTQRIAQSITPYRITVVQGNFVSQE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCHH
KASQLQVGMSREQVRALLGTPLLTDMFHADRWDYLFYFKRGSTSVVQQRDLVVNFAGDRL
HHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHCCEEEEECCCCC
AGWSGAENLPSELDLLADIDGDRRGKKARAAAAARAASAPEAAAAAPEAMQAAEQNDANA
CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCHH
QAARAANRATAQVPGQSGAASRFAPSAQMAPNAPTPGGLPPGAAPAIQPQFQFHRPPPPP
HHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AQGGANQPVGPQGADALPNQPLTAPASGAQGTGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]