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The map label for this gene is exbD1 [H]

Identifier: 53720547

GI number: 53720547

Start: 3511066

End: 3511578

Strand: Reverse

Name: exbD1 [H]

Synonym: BPSL2939

Alternate gene names: 53720547

Gene position: 3511578-3511066 (Counterclockwise)

Preceding gene: 53720548

Following gene: 53720546

Centisome position: 86.18

GC content: 73.68

Gene sequence:

>513_bases
ATGGCATTCGGCGGACTCGATCACCAGCACACGTCGCAGCCGATGGCGGACATCAACATGACGCCGCTCATCGACGTGAT
GCTCGTGCTGCTCGTCATCTTCATCATCACCGCGCCGCTCTTGACGCATGCGATCCGGCTCGATTTGCCGAAGGTCGCGG
CCGCGCCCGCGCGCGAGACGCCGGAGACGATCACGGTGTCGATCGACGCGGCGGGCAAGCTGTACTGGAACGACGCGCCC
GTCGCGCCCGACGCGCTCGCCGCGCGGTTGCGCGACGCGGCGGCGGCAGGCCAGGACCCGGAGCTGCATCTGCGCGCCGC
GCGCGACACCCGCTACGACACGATCGCGCAGGTGATGGGCGCCGCGCAGCAGGCGGGCGTCGCGCGGATCGGCTTCGTCA
CCGACGCGCCCGCGCCGCCGGCCCGGCCGTCGCCGCCGCGCGGCGCACCGCCTTCGCTTTTGCCCCAGGCGCAGCCGCAG
CCACCGTCGCCGCCGCCCGCCGCGTCGCGCTGA

Upstream 100 bases:

>100_bases
GTGTTCGTCTGCGGCGAGCCGGCCGCCGCCGCGGCCGACGATGCGGCCACCGCGGCCTAGCCGGCTGCGTCGATCCGATA
CACCCGGCGAGGAGGGCGGC

Downstream 100 bases:

>100_bases
TCGGCGGTTCGCGGCCGCCCGGACGGCGTGGCCGGCCGGCGCGGACGGTATAATCGACGTTTTCCCCGCGCCGCCCCCGG
CCGCCGGGGAAGCGCGACTT

Product: putative transport-related membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAP
VAPDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLLPQAQPQ
PPSPPPAASR

Sequences:

>Translated_170_residues
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAP
VAPDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLLPQAQPQ
PPSPPPAASR
>Mature_169_residues
AFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAPV
APDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLLPQAQPQP
PSPPPAASR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=33.8709677419355, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 17802; Mature: 17670

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARET
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PETITVSIDAAGKLYWNDAPVAPDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMG
CCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
AAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLLPQAQPQPPSPPPAASR
HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKVAAAPARET
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PETITVSIDAAGKLYWNDAPVAPDALAARLRDAAAAGQDPELHLRAARDTRYDTIAQVMG
CCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
AAQQAGVARIGFVTDAPAPPARPSPPRGAPPSLLPQAQPQPPSPPPAASR
HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]