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The map label for this gene is wcbC [H]

Identifier: 53720416

GI number: 53720416

Start: 3355330

End: 3356493

Strand: Reverse

Name: wcbC [H]

Synonym: BPSL2807

Alternate gene names: 53720416

Gene position: 3356493-3355330 (Counterclockwise)

Preceding gene: 53720422

Following gene: 53720415

Centisome position: 82.38

GC content: 60.82

Gene sequence:

>1164_bases
ATGTCGCGTCCATTCTGCAAAACGTTTTTGATCGCGTGTGTCATGGGCGCGGTCACGCTCGCCGGTTGCTCAAGTATCCC
TACGTCGGGGGCCAGTGGCGCGCAAATCGCGCGGGCTGCGCAGAGTCCATCCGGAATTCAGATCGTCGATGTGACCGAGG
ATGTCGCGCGCCAGCTGTTTGCTGATCGAAACACGGCGGACTTCGTGACGGCGCTGGGCGGCGGTGCGTCGTTCCGGCAA
CAGTTGGGCGTCGGCGATACGATTCAGGTGTCCATCTGGGAGGCGCCACCCGCCACGCTTTTTGGCGCGGCTCAGTCGGA
AGGGAGTTCGGGGCCGGCGAACGCGCGCGTGACGGTGCTGCCCGATCAAGCCATCGATGGCGACGGCAATGTCAATATTC
CGTTTGCGGGCCAGGTCAAGGCGGCCGGCCGCTCGCCCACGCAGTTGGCGCGTGAGATTGCCGCGCGGCTGAAGAGCATG
GCGCACGATCCGCAAGTGCTCGTGAAGCTTTCACGCAACGAGACGTCATATGTGACGGTCGTGGGCGATGTGGCGGAAAA
CGCTCGCATGGCTCTGACCGCTCGGGGCGAGCGCCTGCTTGATGCATTGGCGAGCGCAGGCGGGGCGAAGCACCCGGTTG
ACAAGGTTACGATCCAGATAACGCGCGGCAAGACGGTGGCCTCGTTGCCGCTCGACATGGTTATTCGTGATCCGCGGCAG
AATGTCCCGCTGCATGCGGGCGACGTGGTCACTGTCCTGTTTCAGCCGTATAGCTTTACGGTGCTCGGCGCGACGGGCAA
GAATGACGAAATCAATTTTGAAGCGAAGGGCATCACGCTTGCGCAGGCCCTGGCGCGTGCTGGCGGCTTGCAGGATTCGC
GCGCCGATGCAAAGGGCGTATTCATCTTCCGACTTGAAGACGCCAACGCGCTGAAATGGCCGACGGCTCCCGTGCGTACG
ACTGCGGACGGAAAGGTGCCTGTCGTGTATCGCGTGAATCTTCGCGATCCGAATTCGTTTTTCGTGGCTCAGAGCTTCAG
GGTCGACAACAACGATCTGTTGTACGTTTCGAATGCGCCGATTGCCGAACTTCAAAAATTCTTGAATGTCGTGTTCTCCG
TTGCGTATCCGGTGATTACCGGCGTTCAGACAGTCAGGTACTGA

Upstream 100 bases:

>100_bases
CACCGCGTTAGGCTTGCTTTGGTAAACTCTATCGCCGGTGCCCCGCCTACCGGAAGTTATGCGACAATGCGCGAGCTCAT
AGGTTTGCCAACTATAAACA

Downstream 100 bases:

>100_bases
TGACGGCGCTGCAGGTGATGGGTGCCATTGCCGACGGTAAGGGCATGTGTTCGTTGTTTCGGGTGGTAATCGAGTAACAC
TATGAATGGCGTTGCATTCG

Product: putative capsular polysaccharide biosynthesis/export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MSRPFCKTFLIACVMGAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLFADRNTADFVTALGGGASFRQ
QLGVGDTIQVSIWEAPPATLFGAAQSEGSSGPANARVTVLPDQAIDGDGNVNIPFAGQVKAAGRSPTQLAREIAARLKSM
AHDPQVLVKLSRNETSYVTVVGDVAENARMALTARGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQ
NVPLHAGDVVTVLFQPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGVFIFRLEDANALKWPTAPVRT
TADGKVPVVYRVNLRDPNSFFVAQSFRVDNNDLLYVSNAPIAELQKFLNVVFSVAYPVITGVQTVRY

Sequences:

>Translated_387_residues
MSRPFCKTFLIACVMGAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLFADRNTADFVTALGGGASFRQ
QLGVGDTIQVSIWEAPPATLFGAAQSEGSSGPANARVTVLPDQAIDGDGNVNIPFAGQVKAAGRSPTQLAREIAARLKSM
AHDPQVLVKLSRNETSYVTVVGDVAENARMALTARGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQ
NVPLHAGDVVTVLFQPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGVFIFRLEDANALKWPTAPVRT
TADGKVPVVYRVNLRDPNSFFVAQSFRVDNNDLLYVSNAPIAELQKFLNVVFSVAYPVITGVQTVRY
>Mature_386_residues
SRPFCKTFLIACVMGAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLFADRNTADFVTALGGGASFRQQ
LGVGDTIQVSIWEAPPATLFGAAQSEGSSGPANARVTVLPDQAIDGDGNVNIPFAGQVKAAGRSPTQLAREIAARLKSMA
HDPQVLVKLSRNETSYVTVVGDVAENARMALTARGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQN
VPLHAGDVVTVLFQPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGVFIFRLEDANALKWPTAPVRTT
ADGKVPVVYRVNLRDPNSFFVAQSFRVDNNDLLYVSNAPIAELQKFLNVVFSVAYPVITGVQTVRY

Specific function: May form an ATP-driven capsule polysaccharide export apparatus, in association with the BexA, BexB and BexC proteins. May function as a membrane anchor for capsular polysaccharides. Possible porin properties [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=316, Percent_Identity=30.6962025316456, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1788376, Length=395, Percent_Identity=24.5569620253165, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 40907; Mature: 40776

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPFCKTFLIACVMGAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHH
ADRNTADFVTALGGGASFRQQLGVGDTIQVSIWEAPPATLFGAAQSEGSSGPANARVTVL
CCCCCHHHHHHCCCCHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEE
PDQAIDGDGNVNIPFAGQVKAAGRSPTQLAREIAARLKSMAHDPQVLVKLSRNETSYVTV
CCCCCCCCCCEECCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEE
VGDVAENARMALTARGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQ
EECCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCCC
NVPLHAGDVVTVLFQPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGV
CCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCEE
FIFRLEDANALKWPTAPVRTTADGKVPVVYRVNLRDPNSFFVAQSFRVDNNDLLYVSNAP
EEEEECCCCCEECCCCCCEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCC
IAELQKFLNVVFSVAYPVITGVQTVRY
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRPFCKTFLIACVMGAVTLAGCSSIPTSGASGAQIARAAQSPSGIQIVDVTEDVARQLF
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHH
ADRNTADFVTALGGGASFRQQLGVGDTIQVSIWEAPPATLFGAAQSEGSSGPANARVTVL
CCCCCHHHHHHCCCCHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEE
PDQAIDGDGNVNIPFAGQVKAAGRSPTQLAREIAARLKSMAHDPQVLVKLSRNETSYVTV
CCCCCCCCCCEECCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEE
VGDVAENARMALTARGERLLDALASAGGAKHPVDKVTIQITRGKTVASLPLDMVIRDPRQ
EECCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCCC
NVPLHAGDVVTVLFQPYSFTVLGATGKNDEINFEAKGITLAQALARAGGLQDSRADAKGV
CCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCEE
FIFRLEDANALKWPTAPVRTTADGKVPVVYRVNLRDPNSFFVAQSFRVDNNDLLYVSNAP
EEEEECCCCCEECCCCCCEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCEEEECCCC
IAELQKFLNVVFSVAYPVITGVQTVRY
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2082145 [H]