| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is wcbQ [H]
Identifier: 53720399
GI number: 53720399
Start: 3337120
End: 3338652
Strand: Reverse
Name: wcbQ [H]
Synonym: BPSL2790
Alternate gene names: 53720399
Gene position: 3338652-3337120 (Counterclockwise)
Preceding gene: 53720400
Following gene: 53720398
Centisome position: 81.94
GC content: 60.73
Gene sequence:
>1533_bases GTGGCGTCGTCGATGCCGATCACATTCGTCTTTGCCATTGCCCTGTCATTTGCCGCAGATGCGATTGCAATTCCCCGCGC CGCCGTTCGCCGTCCGTTCCTGGCGGGGGCGTTGCATACCGCGAGCGTGTTGTTCGTCGCCTGCGTCATCCTTGCGCTGA CCCGTCGCCCGCATTTTGCCGCGTTCCTCGCTCTGGCGCTGGTGGCGCTTGCCGGCGCGGTCAGCAATGCGAAATTTTCA TCCCTACGCGAGCCGTTTGTTTTTACCGACCTGAGTCTGTTCAGTCAGTTGTTCTCGCATCCGCGTCTTTACTTGCCGTT TCTGAGCGCGACAACGGTCGTGGCGATGGTGCTCGGCTCGGTTGCGCTGGCGGCCGGTTTCTTTCTCGATCCTGCGGTAT CGGCGCAAACCGCGTGGCAAGCGGCCATGGCGGCCCTGATTTGTTTCGCGACGGGCGGCTTGTGCGCGGCGCGTTTACCG CTCACACTCGATCCGCTCGACGATCAGCGCCGTCACGGGTTCTTTGCGGTCTTTGTTGCATATTTATTGAACGGCATGCG ACCAGCCACGTTTCGCTCGGTAGCGGGATTGACTTGCGCGGGCCCGTTTGCTAGTGAAGACGAATTGCCCGGTCATCCCG ACGTGATCGTGATCCAAAGCGAATCCTTCTTCGATCCGCGCCCGTTGTCGGCCGCGATCGATTCTTCGATTCTCGGTCAC TTCGATCGGGTATGTCGCGAGTCCGTCGAGCACGGACAACTGGCCGTGCCCGCCTGGGGGGCGAACACGATGCGCTCGGA ATTTGCATTCCTGACCGGTTTGCCGTCATCGCACCTGGGCTACGCGCGATTCTATCCCTATGCATTCGTGCGGCGCATCA GCGCTTCACTGGCCGGCTGGTTCCGCCGGGCCGGTTATCGTACGACGGCCATTCATCCTTATTACGCGGATTTTTTCGGC CGCGACCGGGTTTTTCCGCTGCTTCAGTTCGATCGCTTTTTCGACATTCGCGCGTTCGGCGATGCACCGCGTGCGGGCCC GTATATTTCAGATGCGGCCGTGCTCGACCAGATCGTCGCGGTGCTCGACGAGAAGCGCACGCAACCGGCCTTTCTATTTG CGATGACGATGGAAAATCACGGCCCGCTGCACCTGGAGCCGGTGGAAGCAGGAGAGGCCGCCCGCTACCATACGCTGGGC GATGACGCCACCTGGCGCGACCTGACGGCATACCTGCGCCACGTCGCCAACGCAGATGCAATGATCGGACGGCTTGTTGC CTATCTGCGCCAGTGCCGTCGAGATACGATTTTGTGTTTCTACGGCGATCATGTGCCCGCGTTGTCGCATGTATTCGAGA GGTTCGGGAACATACCCGACCAAAGCAATTACTTCATCTGGCGGAATTTCGGGGAACACGCTCCCCGCAAGCAGGACCGC GCGGTCGAGGAACTTGGCACCGCGTTGCTTCGCGCGATGAAGACGACGGGTAGGCAGGCGGTTTCGACTGGCGCGTCGGA GATAACAACGTAG
Upstream 100 bases:
>100_bases CTGCTCGCGCTCGGCATGCGGCTGCTCCCGCTGTTGCCCGCGGTGATGGCGGATGCGATCCTCGGTCGATTGTCCTATTT GCCGCGCGAGGAGCGATAGC
Downstream 100 bases:
>100_bases CTATGGTTAACACTAAGATCGCAATTATCGGTGCGTCTTGCCGATTCCCCGGCGGCGTTGCCGGGCTGGAAGAATACTGG CAATTGCTCAAGAGCGAACG
Product: putative capsular polysaccharide biosynthesis transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MASSMPITFVFAIALSFAADAIAIPRAAVRRPFLAGALHTASVLFVACVILALTRRPHFAAFLALALVALAGAVSNAKFS SLREPFVFTDLSLFSQLFSHPRLYLPFLSATTVVAMVLGSVALAAGFFLDPAVSAQTAWQAAMAALICFATGGLCAARLP LTLDPLDDQRRHGFFAVFVAYLLNGMRPATFRSVAGLTCAGPFASEDELPGHPDVIVIQSESFFDPRPLSAAIDSSILGH FDRVCRESVEHGQLAVPAWGANTMRSEFAFLTGLPSSHLGYARFYPYAFVRRISASLAGWFRRAGYRTTAIHPYYADFFG RDRVFPLLQFDRFFDIRAFGDAPRAGPYISDAAVLDQIVAVLDEKRTQPAFLFAMTMENHGPLHLEPVEAGEAARYHTLG DDATWRDLTAYLRHVANADAMIGRLVAYLRQCRRDTILCFYGDHVPALSHVFERFGNIPDQSNYFIWRNFGEHAPRKQDR AVEELGTALLRAMKTTGRQAVSTGASEITT
Sequences:
>Translated_510_residues MASSMPITFVFAIALSFAADAIAIPRAAVRRPFLAGALHTASVLFVACVILALTRRPHFAAFLALALVALAGAVSNAKFS SLREPFVFTDLSLFSQLFSHPRLYLPFLSATTVVAMVLGSVALAAGFFLDPAVSAQTAWQAAMAALICFATGGLCAARLP LTLDPLDDQRRHGFFAVFVAYLLNGMRPATFRSVAGLTCAGPFASEDELPGHPDVIVIQSESFFDPRPLSAAIDSSILGH FDRVCRESVEHGQLAVPAWGANTMRSEFAFLTGLPSSHLGYARFYPYAFVRRISASLAGWFRRAGYRTTAIHPYYADFFG RDRVFPLLQFDRFFDIRAFGDAPRAGPYISDAAVLDQIVAVLDEKRTQPAFLFAMTMENHGPLHLEPVEAGEAARYHTLG DDATWRDLTAYLRHVANADAMIGRLVAYLRQCRRDTILCFYGDHVPALSHVFERFGNIPDQSNYFIWRNFGEHAPRKQDR AVEELGTALLRAMKTTGRQAVSTGASEITT >Mature_509_residues ASSMPITFVFAIALSFAADAIAIPRAAVRRPFLAGALHTASVLFVACVILALTRRPHFAAFLALALVALAGAVSNAKFSS LREPFVFTDLSLFSQLFSHPRLYLPFLSATTVVAMVLGSVALAAGFFLDPAVSAQTAWQAAMAALICFATGGLCAARLPL TLDPLDDQRRHGFFAVFVAYLLNGMRPATFRSVAGLTCAGPFASEDELPGHPDVIVIQSESFFDPRPLSAAIDSSILGHF DRVCRESVEHGQLAVPAWGANTMRSEFAFLTGLPSSHLGYARFYPYAFVRRISASLAGWFRRAGYRTTAIHPYYADFFGR DRVFPLLQFDRFFDIRAFGDAPRAGPYISDAAVLDQIVAVLDEKRTQPAFLFAMTMENHGPLHLEPVEAGEAARYHTLGD DATWRDLTAYLRHVANADAMIGRLVAYLRQCRRDTILCFYGDHVPALSHVFERFGNIPDQSNYFIWRNFGEHAPRKQDRA VEELGTALLRAMKTTGRQAVSTGASEITT
Specific function: Involved in antigen K (capsular polysaccharide) biosynthesis [H]
COG id: COG1368
COG function: function code M; Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 55934; Mature: 55803
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSMPITFVFAIALSFAADAIAIPRAAVRRPFLAGALHTASVLFVACVILALTRRPHFA CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH AFLALALVALAGAVSNAKFSSLREPFVFTDLSLFSQLFSHPRLYLPFLSATTVVAMVLGS HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH VALAAGFFLDPAVSAQTAWQAAMAALICFATGGLCAARLPLTLDPLDDQRRHGFFAVFVA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEECCCCCHHHHHHHHHHHH YLLNGMRPATFRSVAGLTCAGPFASEDELPGHPDVIVIQSESFFDPRPLSAAIDSSILGH HHHCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH FDRVCRESVEHGQLAVPAWGANTMRSEFAFLTGLPSSHLGYARFYPYAFVRRISASLAGW HHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH FRRAGYRTTAIHPYYADFFGRDRVFPLLQFDRFFDIRAFGDAPRAGPYISDAAVLDQIVA HHHCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHH VLDEKRTQPAFLFAMTMENHGPLHLEPVEAGEAARYHTLGDDATWRDLTAYLRHVANADA HHHHCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCHHH MIGRLVAYLRQCRRDTILCFYGDHVPALSHVFERFGNIPDQSNYFIWRNFGEHAPRKQDR HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH AVEELGTALLRAMKTTGRQAVSTGASEITT HHHHHHHHHHHHHHHHCHHHHHCCHHHCCC >Mature Secondary Structure ASSMPITFVFAIALSFAADAIAIPRAAVRRPFLAGALHTASVLFVACVILALTRRPHFA CCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH AFLALALVALAGAVSNAKFSSLREPFVFTDLSLFSQLFSHPRLYLPFLSATTVVAMVLGS HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH VALAAGFFLDPAVSAQTAWQAAMAALICFATGGLCAARLPLTLDPLDDQRRHGFFAVFVA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEECCCCCHHHHHHHHHHHH YLLNGMRPATFRSVAGLTCAGPFASEDELPGHPDVIVIQSESFFDPRPLSAAIDSSILGH HHHCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH FDRVCRESVEHGQLAVPAWGANTMRSEFAFLTGLPSSHLGYARFYPYAFVRRISASLAGW HHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH FRRAGYRTTAIHPYYADFFGRDRVFPLLQFDRFFDIRAFGDAPRAGPYISDAAVLDQIVA HHHCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHH VLDEKRTQPAFLFAMTMENHGPLHLEPVEAGEAARYHTLGDDATWRDLTAYLRHVANADA HHHHCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCHHH MIGRLVAYLRQCRRDTILCFYGDHVPALSHVFERFGNIPDQSNYFIWRNFGEHAPRKQDR HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH AVEELGTALLRAMKTTGRQAVSTGASEITT HHHHHHHHHHHHHHHHCHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9079896; 11481430 [H]