Click here to switch to the map view.

The map label for this gene is rhaS [H]

Identifier: 53720391

GI number: 53720391

Start: 3320835

End: 3321881

Strand: Reverse

Name: rhaS [H]

Synonym: BPSL2782

Alternate gene names: 53720391

Gene position: 3321881-3320835 (Counterclockwise)

Preceding gene: 53720395

Following gene: 53720390

Centisome position: 81.53

GC content: 66.48

Gene sequence:

>1047_bases
ATGGAATGCGCGTTCAACATTGGTCGGATGGGAGCACACGTGAGTCGTGGTGCAGCTTTCGGAGGCGTGTGCTACCGAAA
AGGGATCGCTGTTGTCTTGTTTGGAGGCTTTTCGTTGATGCAGGCCGGGCGCATGGCGGAGATCTTCAATCTCGCCAATC
GCTTCCGACACGCGGGCGAGGATTCCGGCGGCTACGAAATGCTGCTGTTGTCGGCGACGGGCGGCGCGGTGTATTCGTCG
TCCGGCATTCCCGTCTGGACCCAGCCGCTGCACGAGCGTGCGATCGAGCGCGTGCATGCGATCTTCGCGATCGGCGAACC
GGACGCGGCCGATCGCGATGACGAGAAGGTGTCCGAATGGTTGCGCAGCGCCCGCGCGCATGTTCGCGCATCGGGTGGCG
CGCGGCGCCTGATGGGGCTTGCCGCGCTCGAACGCGGCGATGCGGCGGCGGACGACCTGTCGATCGACGCGATGCTCTCG
GGCGCCGCATCCGCCGAGAAAGTGCGCCCGACAGCGGCGGAGCGCGCGGCGTTCTCGGCCGCGCTCGCGATCATTCGGCA
CGATTGCGGCGATAGCGCTGCGCACGAGGTTGCCGAGCGCTTGTGCCCGGCGCTGAGCGCACGGCCCGCCGAATCGGCTT
TCGCCGCGCGCGAGGCGCGGGCGAGCAAGCTGATTCGCGCGTCGGTTCAGCAACTGCGCGACAACAGCGCCAACCGCATT
TCGATCGCCGATACCGCGCATGCGGCGGCGATGAGCGAGCGCAATTTCCTGCGCCGCTTCAAGCAGGAAATCGGCGTGAC
GCCGTCCGAATTCGTGCAGAAAGTCCGGCTCGAGCATGCGTGCCACATGCTCGTGCATACCGATCTGCCGGTCGACAAGA
TCGCGCGGCGCACCGGCCTCGGCAGCGGCGACCGCCTCGCGAAGCTGTTTCGCCAGCATCTGTCGATGTCGCCGACCGAG
TATCGCGCGATCGAGCGCAGCCGAGGCGCGGATGCGGATCTCGCGTGCGGCGATTTCGTTTCGCGGCTGAGCGGATCGGT
TTCATAA

Upstream 100 bases:

>100_bases
ACATGGCGTCGTAATCGGACAGAAAGATTGTTGCAACGATTTGAAGGAATATGATGCGCCGCAGAATAGACATTGCTGAA
TGAGTGAAAGGGCCGGCGGC

Downstream 100 bases:

>100_bases
CAGGCGGCGCGCCGCGCTCGTCGCTTCACTCCCCCACGTCCGTTTCGCCACGCTCGCGTGCGAAGCCGCGGGCGGCGTTC
GATCGTCGTTTCGGGAAGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATGGAVYSS
SGIPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLS
GAASAEKVRPTAAERAAFSAALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRDNSANRI
SIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHLSMSPTE
YRAIERSRGADADLACGDFVSRLSGSVS

Sequences:

>Translated_348_residues
MECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATGGAVYSS
SGIPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLS
GAASAEKVRPTAAERAAFSAALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRDNSANRI
SIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHLSMSPTE
YRAIERSRGADADLACGDFVSRLSGSVS
>Mature_348_residues
MECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATGGAVYSS
SGIPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLS
GAASAEKVRPTAAERAAFSAALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRDNSANRI
SIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHLSMSPTE
YRAIERSRGADADLACGDFVSRLSGSVS

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37329; Mature: 37329

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGE
CCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEECCHHHHHHCHHHHHHHHHHHHHHCCC
DSGGYEMLLLSATGGAVYSSSGIPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEW
CCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHH
LRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLSGAASAEKVRPTAAERAAFSA
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHCCCHHHHHHHHHH
ALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRDNSANRI
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
SIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGL
EEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
GSGDRLAKLFRQHLSMSPTEYRAIERSRGADADLACGDFVSRLSGSVS
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGE
CCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEECCHHHHHHCHHHHHHHHHHHHHHCCC
DSGGYEMLLLSATGGAVYSSSGIPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEW
CCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHH
LRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLSGAASAEKVRPTAAERAAFSA
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHCCCHHHHHHHHHH
ALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRDNSANRI
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
SIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGL
EEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
GSGDRLAKLFRQHLSMSPTEYRAIERSRGADADLACGDFVSRLSGSVS
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA