Click here to switch to the map view.

The map label for this gene is ybaV [C]

Identifier: 53720118

GI number: 53720118

Start: 3022411

End: 3022728

Strand: Reverse

Name: ybaV [C]

Synonym: BPSL2508

Alternate gene names: 53720118

Gene position: 3022728-3022411 (Counterclockwise)

Preceding gene: 53720119

Following gene: 53720117

Centisome position: 74.19

GC content: 71.7

Gene sequence:

>318_bases
ATGCTGAAGAAACTTCTCGCGACGGCCGCGCTGTGCGCCGCGGCTGCGCACGGATGGGCCGCCGTCGACGTCAACGCCGC
GAACGACGATGCGCTTCGCGGCATCAGGGGCATCGGCCCGGCGAAAGCCAAGGCGATCGTCGATGAGCGCAGTGCGCACG
GCCCGTTCAAGGACGCGGCCGACCTCGCGCGCAGAGTGAAAGGCATGGGCGGCAAGACGGTCGAGCGTCTGCAGGCCGAA
GGCCTCGCGATCGGCGCGGCTCGCGCGCCCGCCGCGGCGGGCGCGCCGCAGAAAGCGGCGGCGGCCGGCAAGAAATAA

Upstream 100 bases:

>100_bases
ACGTTCGTTGGCTGTTCGGCCAGCTGTAAGCGGCGCGCGCGCCGCCTTAGACTGGGTCTCACGGTCGGCAGCCGCCGGCC
GTTTTTTCACGGAGATCCAG

Downstream 100 bases:

>100_bases
TCCGGTCTGCTGATGATTCCGGCGCCGGCCGCCTCGCGATCGAGCGGCCGGCGGCAAGGTGATGCCTCCTTCAGGCGCCG
CTTCGGCGGCGGGTTCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Helix-Turn-Helix Protein

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MLKKLLATAALCAAAAHGWAAVDVNAANDDALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRVKGMGGKTVERLQAE
GLAIGAARAPAAAGAPQKAAAAGKK

Sequences:

>Translated_105_residues
MLKKLLATAALCAAAAHGWAAVDVNAANDDALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRVKGMGGKTVERLQAE
GLAIGAARAPAAAGAPQKAAAAGKK
>Mature_105_residues
MLKKLLATAALCAAAAHGWAAVDVNAANDDALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRVKGMGGKTVERLQAE
GLAIGAARAPAAAGAPQKAAAAGKK

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10419; Mature: 10419

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKLLATAALCAAAAHGWAAVDVNAANDDALRGIRGIGPAKAKAIVDERSAHGPFKDAA
CHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHH
DLARRVKGMGGKTVERLQAEGLAIGAARAPAAAGAPQKAAAAGKK
HHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MLKKLLATAALCAAAAHGWAAVDVNAANDDALRGIRGIGPAKAKAIVDERSAHGPFKDAA
CHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHH
DLARRVKGMGGKTVERLQAEGLAIGAARAPAAAGAPQKAAAAGKK
HHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA