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The map label for this gene is rimM [H]

Identifier: 53720100

GI number: 53720100

Start: 3004440

End: 3005075

Strand: Reverse

Name: rimM [H]

Synonym: BPSL2491

Alternate gene names: 53720100

Gene position: 3005075-3004440 (Counterclockwise)

Preceding gene: 53720101

Following gene: 53720099

Centisome position: 73.75

GC content: 68.4

Gene sequence:

>636_bases
GTGTTCGTCCGCAAGCCGGTCGAGCGCGCGTCCGCGAAAGGGACGAGCGACGGCGCGGTTGATTCGCAAGCAATTCGCAT
CGATGCGGCGCAGTCGTGGCCGGACGATGCGGTCGAGGTCGGCGCGGTGGTCGATGCGTACGGCCTGAAGGGCTGGGTCA
AGCTCGCGGCCCACGCCGGTGCGGGGCGAGGCGGCGATGCGCTGCTCAAGGCCCGCGACTGGTGGCTGCAAAAGGGCGCG
GAGCGGAAGTTCGCGCGCGTCACGCAGGCGAAGCTGCACGGCGACACGGTCGTCGCACATCCGGACGGCTCGGTCGATCG
CGATACGGCGCTCGCGCTGCGCGGCGCTCGCGTGTTCGTGCGCCGCGGCGATTTCCCGGCGCTCGCCGCCGACGAATTCT
ACTGGGTCGATCTGATCGGCCTCGATGTCGTCAACGAGGCGGGTGTCGCGCTCGGCAAGATTGCCGACATGATCGACAAC
GGCGTGCATTCGATCATGCGCGTCGAATATCCGGCGACGGGCAAGGATGGTCGGCCGAAAACCGGCGAGCGGCTGATTCC
GTTCGTCGGCGTGTACGTGAAGGCGGTCGAGCAGGCGGCGGGGCGCGTCGTCGTCGACTGGGAAGCCGATTACTGA

Upstream 100 bases:

>100_bases
AAAGCATGGCGCGGCGTGCCGGAAGGGCCGGCTGCGAGGTTCGGTGATGGCGGGTCACGATTCCGGTAATGCAAAGCGCG
GGCGGTCGCCGTCGTTCGGC

Downstream 100 bases:

>100_bases
AATGGACGAAGCCACGCAGAGCGCGATCCAGTTCGACGTCGTCACACTCTTTCCGGAGATGTTTCGCGCGTTGACCGACT
GGGGCATCACGAGCCGCGCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFVRKPVERASAKGTSDGAVDSQAIRIDAAQSWPDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGA
ERKFARVTQAKLHGDTVVAHPDGSVDRDTALALRGARVFVRRGDFPALAADEFYWVDLIGLDVVNEAGVALGKIADMIDN
GVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVDWEADY

Sequences:

>Translated_211_residues
MFVRKPVERASAKGTSDGAVDSQAIRIDAAQSWPDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGA
ERKFARVTQAKLHGDTVVAHPDGSVDRDTALALRGARVFVRRGDFPALAADEFYWVDLIGLDVVNEAGVALGKIADMIDN
GVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVDWEADY
>Mature_211_residues
MFVRKPVERASAKGTSDGAVDSQAIRIDAAQSWPDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGA
ERKFARVTQAKLHGDTVVAHPDGSVDRDTALALRGARVFVRRGDFPALAADEFYWVDLIGLDVVNEAGVALGKIADMIDN
GVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVDWEADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=179, Percent_Identity=27.3743016759777, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 22668; Mature: 22668

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVRKPVERASAKGTSDGAVDSQAIRIDAAQSWPDDAVEVGAVVDAYGLKGWVKLAAHAG
CCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCC
AGRGGDALLKARDWWLQKGAERKFARVTQAKLHGDTVVAHPDGSVDRDTALALRGARVFV
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHEECCEEEE
RRGDFPALAADEFYWVDLIGLDVVNEAGVALGKIADMIDNGVHSIMRVEYPATGKDGRPK
EECCCCCCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC
TGERLIPFVGVYVKAVEQAAGRVVVDWEADY
CCCCHHHHHHHHHHHHHHHCCEEEEEECCCC
>Mature Secondary Structure
MFVRKPVERASAKGTSDGAVDSQAIRIDAAQSWPDDAVEVGAVVDAYGLKGWVKLAAHAG
CCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCC
AGRGGDALLKARDWWLQKGAERKFARVTQAKLHGDTVVAHPDGSVDRDTALALRGARVFV
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHEECCEEEE
RRGDFPALAADEFYWVDLIGLDVVNEAGVALGKIADMIDNGVHSIMRVEYPATGKDGRPK
EECCCCCCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC
TGERLIPFVGVYVKAVEQAAGRVVVDWEADY
CCCCHHHHHHHHHHHHHHHCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA