| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53719774
Identifier: 53719774
GI number: 53719774
Start: 2599226
End: 2600512
Strand: Reverse
Name: 53719774
Synonym: BPSL2165
Alternate gene names: NA
Gene position: 2600512-2599226 (Counterclockwise)
Preceding gene: 53719775
Following gene: 53719773
Centisome position: 63.82
GC content: 71.95
Gene sequence:
>1287_bases TTGGATGGAGCTTGCATGGACGAGTTGACACTCGGGTTGATCGGCGCGGGCGCCGTCGTGGTGGGCGGCGTCGTGGTCTA CAACGCGTGGCAGGGCGCGAAGGTGCGCCGCAGGATGCCGCGCCCGATGCCGAGCGAGGCGGAGGCCGCCGCACGGCACG AGCGCGAAGACGACGCGCCTTTCATCGAGCCGGTGCGCCAGCCGGCGCGCCGCGACGCGGCGGCGGGCGCCGCGTCGGCG GGCGCGGTGGGCGGCGATGCGGTGCGCGTCGAGCCGACGTTCGGCGGCGGCGCGGCGCCCGCCGATACGCCGGCCGATCT TCAGGCCGAGGCGAGCGTCGCGAACGGCGCGCTCGAGCCGGCCGCCGAGGCCGCGCATGGCGGCGAAGCGGCCGTCGCGG CCGATGCCGCGCGCGACGAGCCGCTCGAGCCGGTGCTGCCCGCCGCGACGACGATTTCCGCGGCGCCGCCGGCGGTCGTC GATCGCCGGATCGACTGCATCGTGCCGATCCGCCTCGCGAGCCCGCTCGCGGGCGACAAGATCCTGCCCGCCGCGCAGCG GCTGCGCCGCGCGGGCAGCAAGCCGGTGCACATCGAGGGCAAGCCCGACGGCGGCGATGCATGGGAGCTGCTGCAAAACG GCGTGCGCTACGACGAGCTGCGCGCGGCCGCGCAGCTCGCGAACCGCAGCGGCCCGCTCAACGAGCTCGAGTTCTCCGAG TTCGTGACGGGCGTGCAGCAGTTCGCGGACGCGATCGACGGCGCGCCGGAGTTCCCGGACATGATGGAAACGGTATCGAT GGCGCGCGAGCTCGACGGCTTCGCCGCCCAATGCGACGCGCAACTGTCGATCAACGTGATGTCGGACGGCGCGCCGTGGT CGGCCAATTACGTGCAGGCGGTCGCGTCGCAGGACGGGCTGCTGCTGTCGCGCGACGGCACGCGCTTCGTGAAGCTCGAC GCGAAGCAGAACCCCGTCTTCATGCTGCAGTTCGGCGATACGAACTTCCTGCGCGACGATCTCACGTACAAGGGCGGCAA CCTGATCACGCTCGTGCTCGACGTGCCGGTGGCCGACGAGGACATCCTGCCGTTCCGGCTGATGTGCGATTACGCGAAAT CGCTGTCCGAGCGCATCGGCGCACGCGTCGTCGACGATCAGCGCCGGCCGCTGCCCGAATCGACGCTGCTCGCGATCGAG CAGCAACTGATGAAGCTGTACGCGCGGCTCGAGGAGGCCGGCATTCCGGCCGGCTCGCCCGTCACGCGGCGGCTGTTCAG TCAGTAG
Upstream 100 bases:
>100_bases CATGGAAACGGCCGCGGGTTTTGCCCAGAATTGACGTATGACGAATGGCACGCGGGCGCGCGGCGCATCGGCGCCCGTCC GCGAGTCCGATGACACGGAA
Downstream 100 bases:
>100_bases GCGCCGCCGGGCGCGCGGGTTTCGCCGCGGCGCGGCCTTGCCCGAACGTGCGCGGGCAGCGGCTTGCGCTTGCGTTGCCG CGCCGCATCATCCGGACCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Protein ZipA; Transmembrane Protein; ZipA Related Protein Possibly Involved In; Chromosome Segregation Protein Smc
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MDGACMDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPSEAEAAARHEREDDAPFIEPVRQPARRDAAAGAASA GAVGGDAVRVEPTFGGGAAPADTPADLQAEASVANGALEPAAEAAHGGEAAVAADAARDEPLEPVLPAATTISAAPPAVV DRRIDCIVPIRLASPLAGDKILPAAQRLRRAGSKPVHIEGKPDGGDAWELLQNGVRYDELRAAAQLANRSGPLNELEFSE FVTGVQQFADAIDGAPEFPDMMETVSMARELDGFAAQCDAQLSINVMSDGAPWSANYVQAVASQDGLLLSRDGTRFVKLD AKQNPVFMLQFGDTNFLRDDLTYKGGNLITLVLDVPVADEDILPFRLMCDYAKSLSERIGARVVDDQRRPLPESTLLAIE QQLMKLYARLEEAGIPAGSPVTRRLFSQ
Sequences:
>Translated_428_residues MDGACMDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPSEAEAAARHEREDDAPFIEPVRQPARRDAAAGAASA GAVGGDAVRVEPTFGGGAAPADTPADLQAEASVANGALEPAAEAAHGGEAAVAADAARDEPLEPVLPAATTISAAPPAVV DRRIDCIVPIRLASPLAGDKILPAAQRLRRAGSKPVHIEGKPDGGDAWELLQNGVRYDELRAAAQLANRSGPLNELEFSE FVTGVQQFADAIDGAPEFPDMMETVSMARELDGFAAQCDAQLSINVMSDGAPWSANYVQAVASQDGLLLSRDGTRFVKLD AKQNPVFMLQFGDTNFLRDDLTYKGGNLITLVLDVPVADEDILPFRLMCDYAKSLSERIGARVVDDQRRPLPESTLLAIE QQLMKLYARLEEAGIPAGSPVTRRLFSQ >Mature_428_residues MDGACMDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPSEAEAAARHEREDDAPFIEPVRQPARRDAAAGAASA GAVGGDAVRVEPTFGGGAAPADTPADLQAEASVANGALEPAAEAAHGGEAAVAADAARDEPLEPVLPAATTISAAPPAVV DRRIDCIVPIRLASPLAGDKILPAAQRLRRAGSKPVHIEGKPDGGDAWELLQNGVRYDELRAAAQLANRSGPLNELEFSE FVTGVQQFADAIDGAPEFPDMMETVSMARELDGFAAQCDAQLSINVMSDGAPWSANYVQAVASQDGLLLSRDGTRFVKLD AKQNPVFMLQFGDTNFLRDDLTYKGGNLITLVLDVPVADEDILPFRLMCDYAKSLSERIGARVVDDQRRPLPESTLLAIE QQLMKLYARLEEAGIPAGSPVTRRLFSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45326; Mature: 45326
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGACMDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPSEAEAAARHEREDDAP CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCH FIEPVRQPARRDAAAGAASAGAVGGDAVRVEPTFGGGAAPADTPADLQAEASVANGALEP HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCH AAEAAHGGEAAVAADAARDEPLEPVLPAATTISAAPPAVVDRRIDCIVPIRLASPLAGDK HHHHCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCEEEEEHHCCCCCCCC ILPAAQRLRRAGSKPVHIEGKPDGGDAWELLQNGVRYDELRAAAQLANRSGPLNELEFSE CCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH FVTGVQQFADAIDGAPEFPDMMETVSMARELDGFAAQCDAQLSINVMSDGAPWSANYVQA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCCCCHHHHHH VASQDGLLLSRDGTRFVKLDAKQNPVFMLQFGDTNFLRDDLTYKGGNLITLVLDVPVADE HHCCCCEEEECCCCEEEEEECCCCCEEEEEECCCCHHHCCCEECCCCEEEEEEECCCCCC DILPFRLMCDYAKSLSERIGARVVDDQRRPLPESTLLAIEQQLMKLYARLEEAGIPAGSP CCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH VTRRLFSQ HHHHHHCC >Mature Secondary Structure MDGACMDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRRMPRPMPSEAEAAARHEREDDAP CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCH FIEPVRQPARRDAAAGAASAGAVGGDAVRVEPTFGGGAAPADTPADLQAEASVANGALEP HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCH AAEAAHGGEAAVAADAARDEPLEPVLPAATTISAAPPAVVDRRIDCIVPIRLASPLAGDK HHHHCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCEEEEEHHCCCCCCCC ILPAAQRLRRAGSKPVHIEGKPDGGDAWELLQNGVRYDELRAAAQLANRSGPLNELEFSE CCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH FVTGVQQFADAIDGAPEFPDMMETVSMARELDGFAAQCDAQLSINVMSDGAPWSANYVQA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCCCCHHHHHH VASQDGLLLSRDGTRFVKLDAKQNPVFMLQFGDTNFLRDDLTYKGGNLITLVLDVPVADE HHCCCCEEEECCCCEEEEEECCCCCEEEEEECCCCHHHCCCEECCCCEEEEEEECCCCCC DILPFRLMCDYAKSLSERIGARVVDDQRRPLPESTLLAIEQQLMKLYARLEEAGIPAGSP CCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH VTRRLFSQ HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA