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The map label for this gene is ydfH [H]

Identifier: 53719732

GI number: 53719732

Start: 2548172

End: 2548876

Strand: Reverse

Name: ydfH [H]

Synonym: BPSL2121

Alternate gene names: 53719732

Gene position: 2548876-2548172 (Counterclockwise)

Preceding gene: 53719733

Following gene: 53719731

Centisome position: 62.56

GC content: 67.94

Gene sequence:

>705_bases
ATGCGAACCATGACGAAGAAAGATGCCGCGCCGACGGGCGCGAGTGCCGAGTCGATCGCCGAACGGATCCGCACCGCGAT
CCTCGAGCACCGGCTCGCGCCCGGCACGAAGCTGACGGAAGCGCAGTTGTGCGAAGTGTTCGGCGTAAAGCGCGGCGCGA
TCCGGCAGGCGCTCGCGCTCCTCGCGACCGACCGGCTCGTCGATCTCGAGCCGAACCGCGGCGCGTTCGTCGCGAGTCCG
ACACTGCAGGACGTGCACGAAGTGTTCGAGATGCGGCGCATCGTCGAGCTCGCGGTGATGGAGCGGCTCGCGACGGGACC
GGGCGCGAAGCGCCTGAAGGGCGTCGCGGCGATGATCGACAAGGAGCGCCATGCGTTCGAGCGGCGCGATTTTCCGGCGT
GGATCCGGCTGTCCGGCGAGTTCCATACCGCGCTCGCGGCGCTTACCGGCAACACGGTGCTGCGCGATTGCCTGGGCGGG
CTCGTCGCGCGCTCGACACTGATGTCGGCGCTGTATGAATCGCACGGGCGCAGCCCGTGTTCGTTCGACGACCATGCGCA
GATTCTCGCCGCGCTCGAAGCGGGCGATGCGAAGCGCGCGGCGCAATTGATGGCGCATCATTTGCAGCACGTCGAACTGA
AGATGCTCGATCGGCCGGCGCAAGGCGCGGTCGATCTGCGCGAGGTGTTCGGCGATCCGGGCTGA

Upstream 100 bases:

>100_bases
CACCGAAATGAAGCGCGCCTGCGCACCTCGATTGTGCAAAATAATGGAGCAAAATTGTTGACAATATTTATGTCCAATCT
ACGATGCAGTCCATAACGAG

Downstream 100 bases:

>100_bases
CGGCCGGCCGCACGCCGAACGCGCTCACTGAACTGACGAAATGCCGGGCGGCCGCGTGTGCGGACGCCTCGCCAGGGCGG
CATCGGGCGATCCCGTTCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRTMTKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALALLATDRLVDLEPNRGAFVASP
TLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMIDKERHAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGG
LVARSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG

Sequences:

>Translated_234_residues
MRTMTKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALALLATDRLVDLEPNRGAFVASP
TLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMIDKERHAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGG
LVARSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG
>Mature_234_residues
MRTMTKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALALLATDRLVDLEPNRGAFVASP
TLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMIDKERHAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGG
LVARSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=202, Percent_Identity=25.7425742574257, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25507; Mature: 25507

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTMTKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALAL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
LATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMID
HHHHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
KERHAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPC
HHHHHHHHCCCCEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SFDDHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MRTMTKKDAAPTGASAESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGAIRQALAL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
LATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAAMID
HHHHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
KERHAFERRDFPAWIRLSGEFHTALAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPC
HHHHHHHHCCCCEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SFDDHAQILAALEAGDAKRAAQLMAHHLQHVELKMLDRPAQGAVDLREVFGDPG
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]