| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53719663
Identifier: 53719663
GI number: 53719663
Start: 2451504
End: 2454302
Strand: Reverse
Name: 53719663
Synonym: BPSL2050
Alternate gene names: NA
Gene position: 2454302-2451504 (Counterclockwise)
Preceding gene: 53719666
Following gene: 53719662
Centisome position: 60.24
GC content: 72.42
Gene sequence:
>2799_bases ATGAGCGTGATCACGCAATTCACGTCGCTTTTCAGCGCTGCCAATTGTCTCTATTGTCTCGACGGTCCGGGCGAAATCGC GTCGCTGCAGATCGAGCGCTGGGTGGGGCGGGAGACGCTCTCCGAGAACTTCCAGTGGGATGTCTACGCGCTCGCGACCG ATCCCGGCCTCGACCTCGACGCGATGCTCGGGCAGCGCGTGACGATCCGCACGGCGCTCGCGAACGGCACGAGCGCCGTG CGCAGCGGGCTCGTGGCGCAGGCCGAGTGCATCGGCTACGACGCCGGCCTCGCGCGCTACTGCCTGCAGCTCGTGCCGTG GCTCGCCGCGCTCGCGCACGGCCGCGACGAGCGCACGTTCGTGCGGCAGGGCGTCGCCGACGTGCTCGGCGCGGTGTTCG CGCCGTACGGCGCGATCGCCCGCTGGCGCTTCACCGCGGACGCGAACCAGCGCATCGCGGAACTCGGCGCGCGCGACTAC CGCGTGCAGTACCGCACCCACACGCATTTCGATTTCGTCCGGCACGTGCTTGCCGAAGCGGGTCTCGGCTTTTGCTTCGT CGAGGAGGCGGACGCGCCCGCGGGCCACACGATGCTGATCTTCGACGACAGCACGCAGTTGCCCGAGGACGAGACTTCCG CGCGCATGGGCGGCGTGCCGCAGCGGCTGAGCGGCACGGCGACCGAGCCGGACGACGTGATCGTCGGCATCGGGCGGTCG CTGTCGCTGACCGCGGATCGCGTCACGCTGATCAGCAGCGACTACCGCGGCAACCAGTCGACGAGCGCGACGGCGAGCCT CGGCAATCCGGCCGGATCGCGCGAGCTGTACGACGACGTCGGGCCGGAGGCGTTCGACAGCCTGCGCGAGGCCGACGCCG CCGCGCGGCGGCACGCGGACGCGATCGTCTCGGCGGCGCGCTTCTGGACAGGCTACGGCACGTTGCGCACCGCGCGCGCC GGCCGCGCGCTGCGCATCGCGGGCGCGACGTGGCGCATGTCGCGCGGCGGCGCGCCGGCGCCCGATGCGTTCGTGTTGAC GCGCGTCGATCAGATCGGCATCAACAATTTGCCCGCGACGGTGATGGAGCGCGTCGAGCGCAGCCTCGGCCCGCTGCCGC CCGCGAATCTCGACGCGCGCGTGCTCGCGCAGGCGAAGGCGGGCGGCTATGCGAACCGGTTCGACGCCGCGCCGCGCGAC CAGGCATGGCGCCCGACGCTGGAGGACGGCACCGGCCAGCGACTGAACCCGGTGCCGACGGCGCTCGGCGCGCAGACGGC GATCGTCGTCGGGCCGCAGGGCGAGACGCGGCCGGGCTCGACGGGCCCGGTGCATACCGACGCGCAGGGCCGGTTGCGGC TGCGCTATCACTGGCAGGCGGACGGCGACGCGGGCACCTATCCGACGCGCGCGATGCAGCGGCTCGCGAGCGAGGGGCAC GGGCTGCAGCAGACGCCGCGGATCGGCCACGAAGTGCTGGTGCAGTTCGTCAACGGCCTCGTGCACCGGCCGATCGTGCT CGGCGGGCTGTTCAACGGCCGCGGCGAGGGCGGCGAAGCGCCGACGCCCGGCGGCGAAGCGGGGCAGCCGCTCGACGAAT CGGTCTACGCACAGGCGAGCGACCACGCGGCGAGCGCGCAGGGCAATCTTGCGGGCGGCCATAGCCCCGCGTGGCACGGC GCGGGCGGCGGCGCGAAGCGCCACGATCACGCGGGCGCGCTGTCCGGCTTCAAGAGCCAGGGGTTCGACGGCCAGGGCTA CAACCAGCTCGTCGCGGACGATACCGATCGCATGGGCCGCATGCAGATGGCGACGACGCACGCGGCGACCCAGCTCAACA TCGGCCACTTGCGGCATCAGGCCGACAACTATCTCGGCAGCTTCCGCGGGCAAGGCGTCGAGCTGCGCTCGGACGCGTAC GGCGCGCTGCGCGGCGCGCGCGGCGTGCTGATCTCCAGCTATGCGCCGACGGGGCCGTCGCAGCCGGCGGGCGATGCGTC GGCGCTGCAGTCGCTGCTCGCGCAACAGGCGGGGCTCGCGAAGCTTCTCGACAAATCGGCGGACACGCACAAGACCTTGC CGTTCGCCGCGCAGCGTGGCGCGCAGCGGGCCGGACAGTCGTCGATGAACGGCGACGCCGCGCCGCTCGACGCGCTCGGG AAGAGTTTCGCGACGACGGTCGGCGCCGACGGCTACGCGCAGGCGTCGGCCGACGCATCGCGCCGCGCGACGGGCAATGC GCTGCCGCATACCGGCGACGCGGTGCTCGGCGTCGAGGCGAAGGGCGGCCAGGGGCTGCTGGCCGGCCAGTCGCTGCAAT GGGCGGCGGGCGAGACGCTGACCATCGGCAGCGGCAACGACACCAACCTCGCGGTCAACCGGACGTTGCGCGTGCACAGC GGGCAGGGCATCGGCTGGCTTGCCGGCGCGAACGGCGCGCAGGGCGTCGGCATGAGCGTGATCGCCGGCAAGGACGATCT GGCGCTGCAGGCGCAGCACGACCTGATGGCGCTGCGCGCGCGCGACGATCTGAGGGTCGCGTCGATCGGCGCGGACGTCG AGATCGCGGCGAAGCAGACCGTGCGGCTCGCGGTCAGCGGCGGCGCGCATCTGACGATCGAAGGCGGCAACGTCACGTTC GGCTGCCCGGGCTCGCTCGTCGTTCATGCGGCCCAGCATACGTTCGTCGGGCCGGATCAACTGGCTCCCGCGCTGCCGCA GTTTCCCGAGAAGGTGTGCGTCGAATGCCTGAAGCACGCGATGCAATCGGGCAGCGCACTGGCCGGCAAGGCGATCTGA
Upstream 100 bases:
>100_bases CGGGATGATCGCGCTGCTCAGTGGTTTTATCCGTTGTCCCGTTTTCGTCGCAACGAGCCGTATTCAAAAAATAGTCGAAC CCTGAGAGAGCGGGATTCTC
Downstream 100 bases:
>100_bases GCATGGCGACCGAGCGCTTCGACTGGATCGACCCGTACCCGGCGCGGACGCTGCCGCGTCTGCGGCAGGTGCTCGACGCG CCGTTGACGCATGGGCGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; Rhs Element Vgr Family; VGR-Like Protein; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Rhs Element Vgr-Related Protein; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; VgrG Protein
Number of amino acids: Translated: 932; Mature: 931
Protein sequence:
>932_residues MSVITQFTSLFSAANCLYCLDGPGEIASLQIERWVGRETLSENFQWDVYALATDPGLDLDAMLGQRVTIRTALANGTSAV RSGLVAQAECIGYDAGLARYCLQLVPWLAALAHGRDERTFVRQGVADVLGAVFAPYGAIARWRFTADANQRIAELGARDY RVQYRTHTHFDFVRHVLAEAGLGFCFVEEADAPAGHTMLIFDDSTQLPEDETSARMGGVPQRLSGTATEPDDVIVGIGRS LSLTADRVTLISSDYRGNQSTSATASLGNPAGSRELYDDVGPEAFDSLREADAAARRHADAIVSAARFWTGYGTLRTARA GRALRIAGATWRMSRGGAPAPDAFVLTRVDQIGINNLPATVMERVERSLGPLPPANLDARVLAQAKAGGYANRFDAAPRD QAWRPTLEDGTGQRLNPVPTALGAQTAIVVGPQGETRPGSTGPVHTDAQGRLRLRYHWQADGDAGTYPTRAMQRLASEGH GLQQTPRIGHEVLVQFVNGLVHRPIVLGGLFNGRGEGGEAPTPGGEAGQPLDESVYAQASDHAASAQGNLAGGHSPAWHG AGGGAKRHDHAGALSGFKSQGFDGQGYNQLVADDTDRMGRMQMATTHAATQLNIGHLRHQADNYLGSFRGQGVELRSDAY GALRGARGVLISSYAPTGPSQPAGDASALQSLLAQQAGLAKLLDKSADTHKTLPFAAQRGAQRAGQSSMNGDAAPLDALG KSFATTVGADGYAQASADASRRATGNALPHTGDAVLGVEAKGGQGLLAGQSLQWAAGETLTIGSGNDTNLAVNRTLRVHS GQGIGWLAGANGAQGVGMSVIAGKDDLALQAQHDLMALRARDDLRVASIGADVEIAAKQTVRLAVSGGAHLTIEGGNVTF GCPGSLVVHAAQHTFVGPDQLAPALPQFPEKVCVECLKHAMQSGSALAGKAI
Sequences:
>Translated_932_residues MSVITQFTSLFSAANCLYCLDGPGEIASLQIERWVGRETLSENFQWDVYALATDPGLDLDAMLGQRVTIRTALANGTSAV RSGLVAQAECIGYDAGLARYCLQLVPWLAALAHGRDERTFVRQGVADVLGAVFAPYGAIARWRFTADANQRIAELGARDY RVQYRTHTHFDFVRHVLAEAGLGFCFVEEADAPAGHTMLIFDDSTQLPEDETSARMGGVPQRLSGTATEPDDVIVGIGRS LSLTADRVTLISSDYRGNQSTSATASLGNPAGSRELYDDVGPEAFDSLREADAAARRHADAIVSAARFWTGYGTLRTARA GRALRIAGATWRMSRGGAPAPDAFVLTRVDQIGINNLPATVMERVERSLGPLPPANLDARVLAQAKAGGYANRFDAAPRD QAWRPTLEDGTGQRLNPVPTALGAQTAIVVGPQGETRPGSTGPVHTDAQGRLRLRYHWQADGDAGTYPTRAMQRLASEGH GLQQTPRIGHEVLVQFVNGLVHRPIVLGGLFNGRGEGGEAPTPGGEAGQPLDESVYAQASDHAASAQGNLAGGHSPAWHG AGGGAKRHDHAGALSGFKSQGFDGQGYNQLVADDTDRMGRMQMATTHAATQLNIGHLRHQADNYLGSFRGQGVELRSDAY GALRGARGVLISSYAPTGPSQPAGDASALQSLLAQQAGLAKLLDKSADTHKTLPFAAQRGAQRAGQSSMNGDAAPLDALG KSFATTVGADGYAQASADASRRATGNALPHTGDAVLGVEAKGGQGLLAGQSLQWAAGETLTIGSGNDTNLAVNRTLRVHS GQGIGWLAGANGAQGVGMSVIAGKDDLALQAQHDLMALRARDDLRVASIGADVEIAAKQTVRLAVSGGAHLTIEGGNVTF GCPGSLVVHAAQHTFVGPDQLAPALPQFPEKVCVECLKHAMQSGSALAGKAI >Mature_931_residues SVITQFTSLFSAANCLYCLDGPGEIASLQIERWVGRETLSENFQWDVYALATDPGLDLDAMLGQRVTIRTALANGTSAVR SGLVAQAECIGYDAGLARYCLQLVPWLAALAHGRDERTFVRQGVADVLGAVFAPYGAIARWRFTADANQRIAELGARDYR VQYRTHTHFDFVRHVLAEAGLGFCFVEEADAPAGHTMLIFDDSTQLPEDETSARMGGVPQRLSGTATEPDDVIVGIGRSL SLTADRVTLISSDYRGNQSTSATASLGNPAGSRELYDDVGPEAFDSLREADAAARRHADAIVSAARFWTGYGTLRTARAG RALRIAGATWRMSRGGAPAPDAFVLTRVDQIGINNLPATVMERVERSLGPLPPANLDARVLAQAKAGGYANRFDAAPRDQ AWRPTLEDGTGQRLNPVPTALGAQTAIVVGPQGETRPGSTGPVHTDAQGRLRLRYHWQADGDAGTYPTRAMQRLASEGHG LQQTPRIGHEVLVQFVNGLVHRPIVLGGLFNGRGEGGEAPTPGGEAGQPLDESVYAQASDHAASAQGNLAGGHSPAWHGA GGGAKRHDHAGALSGFKSQGFDGQGYNQLVADDTDRMGRMQMATTHAATQLNIGHLRHQADNYLGSFRGQGVELRSDAYG ALRGARGVLISSYAPTGPSQPAGDASALQSLLAQQAGLAKLLDKSADTHKTLPFAAQRGAQRAGQSSMNGDAAPLDALGK SFATTVGADGYAQASADASRRATGNALPHTGDAVLGVEAKGGQGLLAGQSLQWAAGETLTIGSGNDTNLAVNRTLRVHSG QGIGWLAGANGAQGVGMSVIAGKDDLALQAQHDLMALRARDDLRVASIGADVEIAAKQTVRLAVSGGAHLTIEGGNVTFG CPGSLVVHAAQHTFVGPDQLAPALPQFPEKVCVECLKHAMQSGSALAGKAI
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97455; Mature: 97324
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS00047 HISTONE_H4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVITQFTSLFSAANCLYCLDGPGEIASLQIERWVGRETLSENFQWDVYALATDPGLDLD CCHHHHHHHHHHHCCEEEEECCCCCEEEEEHHHHHCHHHHHCCCCEEEEEEECCCCCCHH AMLGQRVTIRTALANGTSAVRSGLVAQAECIGYDAGLARYCLQLVPWLAALAHGRDERTF HHHCCCEEEEEECCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHH VRQGVADVLGAVFAPYGAIARWRFTADANQRIAELGARDYRVQYRTHTHFDFVRHVLAEA HHHHHHHHHHHHHCCCCHHEEEEEECCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHC GLGFCFVEEADAPAGHTMLIFDDSTQLPEDETSARMGGVPQRLSGTATEPDDVIVGIGRS CCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCEEEECCCC LSLTADRVTLISSDYRGNQSTSATASLGNPAGSRELYDDVGPEAFDSLREADAAARRHAD EEECCCEEEEEECCCCCCCCCCCEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH AIVSAARFWTGYGTLRTARAGRALRIAGATWRMSRGGAPAPDAFVLTRVDQIGINNLPAT HHHHHHHHHHCCCHHHHHCCCCEEEEECCEEEECCCCCCCCCCEEEEEHHHCCCCCCCHH VMERVERSLGPLPPANLDARVLAQAKAGGYANRFDAAPRDQAWRPTLEDGTGQRLNPVPT HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCH ALGAQTAIVVGPQGETRPGSTGPVHTDAQGRLRLRYHWQADGDAGTYPTRAMQRLASEGH HCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCC GLQQTPRIGHEVLVQFVNGLVHRPIVLGGLFNGRGEGGEAPTPGGEAGQPLDESVYAQAS CCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC DHAASAQGNLAGGHSPAWHGAGGGAKRHDHAGALSGFKSQGFDGQGYNQLVADDTDRMGR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCHHCCCHHHHCC MQMATTHAATQLNIGHLRHQADNYLGSFRGQGVELRSDAYGALRGARGVLISSYAPTGPS CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCEEEECCCCCCCC QPAGDASALQSLLAQQAGLAKLLDKSADTHKTLPFAAQRGAQRAGQSSMNGDAAPLDALG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH KSFATTVGADGYAQASADASRRATGNALPHTGDAVLGVEAKGGQGLLAGQSLQWAAGETL HHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEEECCCCCEEEECCCEEECCCCEE TIGSGNDTNLAVNRTLRVHSGQGIGWLAGANGAQGVGMSVIAGKDDLALQAQHDLMALRA EECCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCEEEEHHHHHEECC RDDLRVASIGADVEIAAKQTVRLAVSGGAHLTIEGGNVTFGCPGSLVVHAAQHTFVGPDQ CCCCEEEEECCCEEEECCCEEEEEEECCCEEEEECCEEEECCCCHHEEEEHHHCCCCHHH LAPALPQFPEKVCVECLKHAMQSGSALAGKAI HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SVITQFTSLFSAANCLYCLDGPGEIASLQIERWVGRETLSENFQWDVYALATDPGLDLD CHHHHHHHHHHHCCEEEEECCCCCEEEEEHHHHHCHHHHHCCCCEEEEEEECCCCCCHH AMLGQRVTIRTALANGTSAVRSGLVAQAECIGYDAGLARYCLQLVPWLAALAHGRDERTF HHHCCCEEEEEECCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHH VRQGVADVLGAVFAPYGAIARWRFTADANQRIAELGARDYRVQYRTHTHFDFVRHVLAEA HHHHHHHHHHHHHCCCCHHEEEEEECCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHC GLGFCFVEEADAPAGHTMLIFDDSTQLPEDETSARMGGVPQRLSGTATEPDDVIVGIGRS CCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCEEEECCCC LSLTADRVTLISSDYRGNQSTSATASLGNPAGSRELYDDVGPEAFDSLREADAAARRHAD EEECCCEEEEEECCCCCCCCCCCEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH AIVSAARFWTGYGTLRTARAGRALRIAGATWRMSRGGAPAPDAFVLTRVDQIGINNLPAT HHHHHHHHHHCCCHHHHHCCCCEEEEECCEEEECCCCCCCCCCEEEEEHHHCCCCCCCHH VMERVERSLGPLPPANLDARVLAQAKAGGYANRFDAAPRDQAWRPTLEDGTGQRLNPVPT HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCH ALGAQTAIVVGPQGETRPGSTGPVHTDAQGRLRLRYHWQADGDAGTYPTRAMQRLASEGH HCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCC GLQQTPRIGHEVLVQFVNGLVHRPIVLGGLFNGRGEGGEAPTPGGEAGQPLDESVYAQAS CCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC DHAASAQGNLAGGHSPAWHGAGGGAKRHDHAGALSGFKSQGFDGQGYNQLVADDTDRMGR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCHHCCCHHHHCC MQMATTHAATQLNIGHLRHQADNYLGSFRGQGVELRSDAYGALRGARGVLISSYAPTGPS CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCEEEECCCCCCCC QPAGDASALQSLLAQQAGLAKLLDKSADTHKTLPFAAQRGAQRAGQSSMNGDAAPLDALG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH KSFATTVGADGYAQASADASRRATGNALPHTGDAVLGVEAKGGQGLLAGQSLQWAAGETL HHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEEECCCCCEEEECCCEEECCCCEE TIGSGNDTNLAVNRTLRVHSGQGIGWLAGANGAQGVGMSVIAGKDDLALQAQHDLMALRA EECCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCEEEEHHHHHEECC RDDLRVASIGADVEIAAKQTVRLAVSGGAHLTIEGGNVTFGCPGSLVVHAAQHTFVGPDQ CCCCEEEEECCCEEEECCCEEEEEEECCCEEEEECCEEEECCCCHHEEEEHHHCCCCHHH LAPALPQFPEKVCVECLKHAMQSGSALAGKAI HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA