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The map label for this gene is rbn [C]

Identifier: 53719578

GI number: 53719578

Start: 2340641

End: 2341945

Strand: Reverse

Name: rbn [C]

Synonym: BPSL1966

Alternate gene names: 53719578

Gene position: 2341945-2340641 (Counterclockwise)

Preceding gene: 53719583

Following gene: 53719576

Centisome position: 57.48

GC content: 68.58

Gene sequence:

>1305_bases
TTGAGCGTCGATCTCGACACCATCAAGCGTCTCGCGCGCTTCGCCGCGAAGCGCAGCGCGGAAGACCGCATCCCGCAGGT
CGCGGGCAGCCTCACGTTCACGACGATGCTCGCGCTCGTGCCGCTCGTGACGGTCGCCTTCGCGCTCTTCACCGCGTTCC
CGATGTTCGCGTCGTTCCAGAATTCGCTGCAGGGCTTCCTCGCCGATCACCTGATGCCCGCGCAGTTCAACAGCCAGATC
TTCAAGTACCTGAACCAGTTCGCGTCGAAGGCGAAGGGGCTGACGACGGCGGGCCTCATCGTGCTCGTCTTCACCGCGGT
GATGATGATGATGACGATCGAATCCGCGTTCAACCTGATCTGGCGCGTGCGCAAGCCGCGCCCGTTCGCGCAGCGCGTGC
TCGCGTACTGGGCGCTGATCACGCTCGGGCCGCTGCTGTTCGGCGTGAGCCTGTCGATGTCGTCGTACCTGTTCACGAAA
TCGCTCGCGTTCGCCGGCTCGACGAGCACGCCGCCGGTCTTCGAATGGCTGCTGGCGGCCGCGTCGCTGCCGCTCACGGT
GCTCGCGTTCACGCTGCTCTACGTGTATCTGCCGAACTGCACGGTCGCGTGGCGCGACGCGGTGGTGGGCGGCGTGTGCG
CGGCGCTCGCGTTCGAGCTCGCCAAGCGCGGCTTCGGCTACTACGTGCGGCGCATTCCCACTTACACGGCGGTGTACGGC
GCGTTCGCGACCGTGCCGATGTTTCTGCTGTGGCTGTATCTGAGCTGGTTCGTCACGCTCGCGGGCGCGATGATCGCGTC
GGCGCTGCCGGCGATCCGGGTCGGGCAGTTCCACCGGATCCATTACCCGGGCAGCGATCTGCTCGACTCGCTCGAGCTGC
TCGCGCGGCTCGCCGACGCGCAGCAGGCGGGCAAGCCGGGCCACACGGCCGCGCGGCTCGCGCTGATGGCGCGCTGCGAC
ATGGAAACCGCGCAGCGGCTTTTGTCGACGCTCGAGGAGCGCGAATGGGTCGCGCGGCTGCAAAGCGGCAACGACGCCGC
GCCGCGCTACGTGATGCTCGCGAACCCGGAGCGGCTGACGGTCGCGAACCTGTTCGACGTGCTCGTGATCGACCGCTCCG
AGCTCGTCTACCAGGCGCAGCGCGGCCGGACCGAGGTCGATTGCGCGACGCTTGTCGATGCGTTCACGAGCGAGAAGCTC
GATCTGTCGCTCGCGGAGCTGATCGCGCGCCGCAGGCAGGGCGCGTCGCGCGACGCACCGGGCGCGGCGCACTCGACGTC
CGCGCTGCCGCCGCGCACCGCGTGA

Upstream 100 bases:

>100_bases
AGCGGCTATTATAGGGGCTGAAGCCGCCGCGAAGCGTCGCGGTTCGACCTGCCGCGCCGCGCGCGGCACGTGCAGCAATA
GGAGAAAGCCGTTGCCGAAG

Downstream 100 bases:

>100_bases
CGCGGGAGCGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCACGAAGCGCACGAAACCGT
GTCATCACGGTGCCACGCTG

Product: putative tRNA processing exoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQNSLQGFLADHLMPAQFNSQI
FKYLNQFASKAKGLTTAGLIVLVFTAVMMMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSMSSYLFTK
SLAFAGSTSTPPVFEWLLAAASLPLTVLAFTLLYVYLPNCTVAWRDAVVGGVCAALAFELAKRGFGYYVRRIPTYTAVYG
AFATVPMFLLWLYLSWFVTLAGAMIASALPAIRVGQFHRIHYPGSDLLDSLELLARLADAQQAGKPGHTAARLALMARCD
METAQRLLSTLEEREWVARLQSGNDAAPRYVMLANPERLTVANLFDVLVIDRSELVYQAQRGRTEVDCATLVDAFTSEKL
DLSLAELIARRRQGASRDAPGAAHSTSALPPRTA

Sequences:

>Translated_434_residues
MSVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQNSLQGFLADHLMPAQFNSQI
FKYLNQFASKAKGLTTAGLIVLVFTAVMMMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSMSSYLFTK
SLAFAGSTSTPPVFEWLLAAASLPLTVLAFTLLYVYLPNCTVAWRDAVVGGVCAALAFELAKRGFGYYVRRIPTYTAVYG
AFATVPMFLLWLYLSWFVTLAGAMIASALPAIRVGQFHRIHYPGSDLLDSLELLARLADAQQAGKPGHTAARLALMARCD
METAQRLLSTLEEREWVARLQSGNDAAPRYVMLANPERLTVANLFDVLVIDRSELVYQAQRGRTEVDCATLVDAFTSEKL
DLSLAELIARRRQGASRDAPGAAHSTSALPPRTA
>Mature_433_residues
SVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQNSLQGFLADHLMPAQFNSQIF
KYLNQFASKAKGLTTAGLIVLVFTAVMMMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSMSSYLFTKS
LAFAGSTSTPPVFEWLLAAASLPLTVLAFTLLYVYLPNCTVAWRDAVVGGVCAALAFELAKRGFGYYVRRIPTYTAVYGA
FATVPMFLLWLYLSWFVTLAGAMIASALPAIRVGQFHRIHYPGSDLLDSLELLARLADAQQAGKPGHTAARLALMARCDM
ETAQRLLSTLEEREWVARLQSGNDAAPRYVMLANPERLTVANLFDVLVIDRSELVYQAQRGRTEVDCATLVDAFTSEKLD
LSLAELIARRRQGASRDAPGAAHSTSALPPRTA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=257, Percent_Identity=40.0778210116732, Blast_Score=185, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47692; Mature: 47561

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCC
>Mature Secondary Structure 
SVDLDTIKRLARFAAKRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFASFQ
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSLQGFLADHLMPAQFNSQIFKYLNQFASKAKGLTTAGLIVLVFTAVMMMMTIESAFNLI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WRVRKPRPFAQRVLAYWALITLGPLLFGVSLSMSSYLFTKSLAFAGSTSTPPVFEWLLAA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ASLPLTVLAFTLLYVYLPNCTVAWRDAVVGGVCAALAFELAKRGFGYYVRRIPTYTAVYG
HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
AFATVPMFLLWLYLSWFVTLAGAMIASALPAIRVGQFHRIHYPGSDLLDSLELLARLADA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHH
QQAGKPGHTAARLALMARCDMETAQRLLSTLEEREWVARLQSGNDAAPRYVMLANPERLT
HHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHH
VANLFDVLVIDRSELVYQAQRGRTEVDCATLVDAFTSEKLDLSLAELIARRRQGASRDAP
HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
GAAHSTSALPPRTA
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA