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The map label for this gene is yhcM [H]

Identifier: 53719520

GI number: 53719520

Start: 2267610

End: 2268707

Strand: Reverse

Name: yhcM [H]

Synonym: BPSL1906

Alternate gene names: 53719520

Gene position: 2268707-2267610 (Counterclockwise)

Preceding gene: 53719521

Following gene: 53719519

Centisome position: 55.68

GC content: 65.3

Gene sequence:

>1098_bases
ATGAACGTCACCGAATACTACGAGCACGAGCTGAAGACGCGCGGCTATCAGTCCGATGCCGCGCAGCGCGCCGCGGTCGA
ACGCCTGCAGCGCTGCTACGGCGAATGGGTTGCCTACAAGGCGCGTCGCTCGAATGCGTTCAAGAAACTCGTCGTCCGCC
CCGATCTGCCGCGCGGCGTCTACATGTGGGGCGGTGTCGGGCGCGGCAAGAGCTTCCTGATGGACAGCTTCTACGCGGTC
GTGCCGGTGCAGCGCAAGACGCGGCTGCACTTCCACGAGTTCATGCGCGAAGTGCACCGCGAACTCGAGGAGCTGAAAGG
GCAGGCCGATCCGCTCGACGAGCTCGCGCGCCGGATCGCGAAGCGCTACCGGCTCATCTGCTTCGACGAATTCCACGTAT
CGGACATCGCCGACGCGATGATCCTGTATCGGCTGCTCGACCGGCTGTTCTCGAACGGCGTGCAGTTCGTGATGACGTCC
AACTACGATCCGGACGATCTGTATCCGGACGGCCTGCATCGCGACCGCATGCTGCCCGCGATCGCGCTTCTGAAGGAGCG
GCTCGACGTGCTGAACGTCGACGCGGGCGTCGACTACCGGCAACGCACGCTCACGCAGGTGCGGATGTATCACACGCCGC
TCGGCGCGGATGCCGACCGAGAACTGCGGCACGCGTTCGCGCAGCTCGCCGCGGTGCCGGACGAGAGCCCGATCCTGCAT
ATCGAGAAGCGCGAGATCAAGGCGCTGCGCCGCGCGGACGGCGTCGTCTGGTTCGATTTCGCGACGCTCTGCGGCGGCCC
CCGTTCGCAGAACGACTATCTCGAGCTCGCGAGCCGCTTCCATGCGATCGTGCTGTCGGACGTGCCGCAGATGTCGCCGC
GGATGGCGTCCGAAGCGCGCCGCTTCACGTGGCTCATCGATGTGCTGTACGACCACAAGGTGAAGCTGCTGATGTCGGCC
GCCGTGCCGGCGGACGATCTGTACGTCGAGGGGCCGATGGCGAACGAATTCAGCCGCACCGTCTCGCGGATCGTCGAGAT
GCAGTCGAAGGAATATATCGAGGCGCCGCGCCGCCTGATCGATACGTCGCTGACCTGA

Upstream 100 bases:

>100_bases
CAACGCAACACCGCGCGCCGGCCCTCGCGGCCGGCGTCGCAGTTTCTCGGCGAAGGCGGGCGGGGTTTCCCGCTCGCCTT
CGTTTTTGCCGGTTTGCATG

Downstream 100 bases:

>100_bases
TCCGGTGTGCCGGACAGCGGCGCGCAACGCGCGCCGCGCGGCGCGAACAACCCCGACCCGAATTCGAAAACGCGCGCAGA
CGGTTAACTTCGGTTAATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNVTEYYEHELKTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALLKERLDVLNVDAGVDYRQRTLTQVRMYHTPLGADADRELRHAFAQLAAVPDESPILH
IEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRLIDTSLT

Sequences:

>Translated_365_residues
MNVTEYYEHELKTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALLKERLDVLNVDAGVDYRQRTLTQVRMYHTPLGADADRELRHAFAQLAAVPDESPILH
IEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRLIDTSLT
>Mature_365_residues
MNVTEYYEHELKTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALLKERLDVLNVDAGVDYRQRTLTQVRMYHTPLGADADRELRHAFAQLAAVPDESPILH
IEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRLIDTSLT

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=396, Percent_Identity=34.5959595959596, Blast_Score=239, Evalue=2e-63,
Organism=Escherichia coli, GI1789627, Length=363, Percent_Identity=44.3526170798898, Blast_Score=290, Evalue=1e-79,
Organism=Caenorhabditis elegans, GI17505769, Length=414, Percent_Identity=31.8840579710145, Blast_Score=208, Evalue=3e-54,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=36.2776025236593, Blast_Score=179, Evalue=5e-46,
Organism=Drosophila melanogaster, GI20129913, Length=349, Percent_Identity=34.6704871060172, Blast_Score=191, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42350; Mature: 42350

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTEYYEHELKTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRGV
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIA
EEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMTSNYDPDDLYPDGLHRDRMLPA
HHHHHHEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHH
IALLKERLDVLNVDAGVDYRQRTLTQVRMYHTPLGADADRELRHAFAQLAAVPDESPILH
HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEAR
EHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RFTWLIDVLYDHKVKLLMSAAVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRLI
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
HCCCC
>Mature Secondary Structure
MNVTEYYEHELKTRGYQSDAAQRAAVERLQRCYGEWVAYKARRSNAFKKLVVRPDLPRGV
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIA
EEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDIADAMILYRLLDRLFSNGVQFVMTSNYDPDDLYPDGLHRDRMLPA
HHHHHHEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHH
IALLKERLDVLNVDAGVDYRQRTLTQVRMYHTPLGADADRELRHAFAQLAAVPDESPILH
HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IEKREIKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSDVPQMSPRMASEAR
EHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RFTWLIDVLYDHKVKLLMSAAVPADDLYVEGPMANEFSRTVSRIVEMQSKEYIEAPRRLI
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]