Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 53719420

GI number: 53719420

Start: 2154782

End: 2155525

Strand: Reverse

Name: yecS [H]

Synonym: BPSL1807

Alternate gene names: 53719420

Gene position: 2155525-2154782 (Counterclockwise)

Preceding gene: 53719421

Following gene: 53719417

Centisome position: 52.9

GC content: 71.24

Gene sequence:

>744_bases
ATGGATCTGTCGATACTCGCGAACAATCTGCCGTACCTGCTCGTCGGCGCGTTTCCGGACGGCTCGCTCGGCGGCGCCGC
GCTGTCGCTCGTGCTCGCGCTCGCATCGGCGCTGGCGTCGGCCGGGCTGGGCGTCGCGCTCGGCGTCGCGCTCGCGCTCG
CGACGGGGGCGCTGCGCGGCGCGCTCGTCGTCGTGATCGGTTTTTTTCGTGCGATTCCGGTGCTGATGCTGATCTTCTGG
ACGTACTTCCTGCTGCCGGTGCTGCTGCACGCGGACGTGCCGGGGCTCGCGGCCGTCGTGTGCGCGCTGTCGCTCGTCGG
CGGCGCGTATCTCGCGCATTCGGTGCACGCGGGCATCCGGGCCGCGGGCGACGGGCAATGGCAGGCCGGGCTGGCGCTCG
GGCTCACGCGCTGGCAGACGGTGCGCCACGTGCTGCTGCCGCAGGCGGTCAGGATCATGACGCCGTCGTTCGTCAATCAG
TGGGTGTCGCTCGTGAAGGACACGTCGCTCGCGTACATTGTCGGCGTGCCGGAGCTGTCGTTCGTCGCGACCCAGGTCAA
CAATCGGCTGATGGTGTATCCCGCGCAGATCTTCCTGTTCGTCGGCGTGATCTACCTGATTCTCTGCACCGCGCTCGACG
TCGCGGCGACGCGGCTGCTCGCGCATCGGCGGCGGCGCGCGCCGCGCGGCGACGATGCGACGCGCGCGAGCGCCGCGCAG
CCGGCGGCGGGCGGGCCGCGATAG

Upstream 100 bases:

>100_bases
GCGTGTCGACCGTGCTGTACGTCGCGGCGGTCGCGCTGGTCGAGGCGGCCGCGCAATGGACGCTGCGGCGGCGCGATCGC
ACGTTCGCGGGGCGCTGACG

Downstream 100 bases:

>100_bases
GACGATTCGCGTCCGGGACGCGGCGCGGCGTCACCGCGCCGTCACGACGTCGCGTAATGCGTGTTGAAGATCGCGCGCAG
CGTCGACGTATCGGTGGCGA

Product: putative amino acid transport system, membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDLSILANNLPYLLVGAFPDGSLGGAALSLVLALASALASAGLGVALGVALALATGALRGALVVVIGFFRAIPVLMLIFW
TYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIRAAGDGQWQAGLALGLTRWQTVRHVLLPQAVRIMTPSFVNQ
WVSLVKDTSLAYIVGVPELSFVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
PAAGGPR

Sequences:

>Translated_247_residues
MDLSILANNLPYLLVGAFPDGSLGGAALSLVLALASALASAGLGVALGVALALATGALRGALVVVIGFFRAIPVLMLIFW
TYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIRAAGDGQWQAGLALGLTRWQTVRHVLLPQAVRIMTPSFVNQ
WVSLVKDTSLAYIVGVPELSFVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
PAAGGPR
>Mature_247_residues
MDLSILANNLPYLLVGAFPDGSLGGAALSLVLALASALASAGLGVALGVALALATGALRGALVVVIGFFRAIPVLMLIFW
TYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIRAAGDGQWQAGLALGLTRWQTVRHVLLPQAVRIMTPSFVNQ
WVSLVKDTSLAYIVGVPELSFVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
PAAGGPR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=235, Percent_Identity=31.9148936170213, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1786873, Length=238, Percent_Identity=28.9915966386555, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787030, Length=168, Percent_Identity=34.5238095238095, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082239, Length=195, Percent_Identity=28.7179487179487, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48994930, Length=199, Percent_Identity=32.1608040201005, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=30.7339449541284, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787087, Length=141, Percent_Identity=31.2056737588652, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=26.605504587156, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786874, Length=221, Percent_Identity=25.3393665158371, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25779; Mature: 25779

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSILANNLPYLLVGAFPDGSLGGAALSLVLALASALASAGLGVALGVALALATGALRG
CCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALVVVIGFFRAIPVLMLIFWTYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
AAGDGQWQAGLALGLTRWQTVRHVLLPQAVRIMTPSFVNQWVSLVKDTSLAYIVGVPELS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCHH
FVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
HHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC
PAAGGPR
CCCCCCC
>Mature Secondary Structure
MDLSILANNLPYLLVGAFPDGSLGGAALSLVLALASALASAGLGVALGVALALATGALRG
CCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALVVVIGFFRAIPVLMLIFWTYFLLPVLLHADVPGLAAVVCALSLVGGAYLAHSVHAGIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
AAGDGQWQAGLALGLTRWQTVRHVLLPQAVRIMTPSFVNQWVSLVKDTSLAYIVGVPELS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCHH
FVATQVNNRLMVYPAQIFLFVGVIYLILCTALDVAATRLLAHRRRRAPRGDDATRASAAQ
HHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC
PAAGGPR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]