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The map label for this gene is rbsB [H]

Identifier: 53719406

GI number: 53719406

Start: 2132189

End: 2133133

Strand: Reverse

Name: rbsB [H]

Synonym: BPSL1793

Alternate gene names: 53719406

Gene position: 2133133-2132189 (Counterclockwise)

Preceding gene: 53719407

Following gene: 53719404

Centisome position: 52.35

GC content: 68.36

Gene sequence:

>945_bases
ATGCACACCGCCTTGTCGACGCCGGCTTCCGGCCGCCGGGCCGCCCGCGCGCTGCGCGCCGCCGCGCTTTCGCTCGCGCT
CGGCGCGGCGAGCGCCGCGCACGCGGCGCCGCTGAAGATCGGCATGACGTTCCAGGAACTGAACAACCCGTACTTCGTGA
CGATGCAAAAGGCGCTCGACGAGGCGGCCGCGTCGATCGGCGCGCAGGTGATCGTCACCGACGCGCATCACGACGTCAGC
AAGCAGGTGAGCGACGTCGAGGACATGCTGCAGAAGAAGATCGACATCCTGCTCGTGAACCCGACCGATTCGACGGGCAT
CCAGTCGGCCGTCGTGTCGGCGAAGAAGGCGGGCGCCGTCGTCGTCGCGGTGGACGCGAACGCGAACGGCCCGGTCGACG
CGTTCGTCGGCTCGAAGAATTTCGACGCGGGCGCGATGTCGTGCGACTACCTCGCGAAGGCGATCGGCGGCGGCGGCGAA
GTCGCGATCCTCGACGGCATCCCGGTCGTGCCGATTCTCGAGCGCGTGCGCGGCTGCCGCGCGGCGCTCGCGAAATTCCC
GAACGTGAGGATCGTCGACGTGCAGAACGGCAGGCAGGAGCGCGCGAGCGCGCTCGCCGTCACCGAGAACATGATCCAGG
CGCACCCGTTGCTCAAGGGCGTCTTCAGCGTCAACGACGGCGGCTCGATGGGCGCGCTGTCCGCGATCGAGGCGTCGGGC
CGCGACATCAAGCTCACGAGCGTCGACGGCGCGCCGGAGGCGATCGCGGCGATGCAGAAGCCGAACTCGAAGTTCATCGA
GACGTCCGCGCAGTTCCCGCGCGACCAGATTCGCCTCGCGATCGGCATCGGGCTCGCGAAGAAGTGGGGCGCCAATGTGC
CGAAGGCGATTCCGGTCGACGTGAAGCGGATCGACAAGGGCAACGCGAAGACGTTCAGTTGGTGA

Upstream 100 bases:

>100_bases
GCCCGCGTTCCCGAGCAATCCAGCCCAACACGCGTCGCCCGGCGCGCCGCTCGCGCGGCGCGCGGGGTGCGCGCATCCCT
AGAAAACGGAGACGACCATG

Downstream 100 bases:

>100_bases
GCGGCCCGCGCGACGAGGCCGACGACATGGACGAAGCGAGCGGCGCGGCGCGCGCGCCTGACGAAGCGAGCGAGGAGGCG
ATGGACACGATACTGGCGCT

Product: putative sugar-binding exported protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKALDEAAASIGAQVIVTDAHHDVS
KQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGGE
VAILDGIPVVPILERVRGCRAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEASG
RDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVDVKRIDKGNAKTFSW

Sequences:

>Translated_314_residues
MHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKALDEAAASIGAQVIVTDAHHDVS
KQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGGE
VAILDGIPVVPILERVRGCRAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEASG
RDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVDVKRIDKGNAKTFSW
>Mature_314_residues
MHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKALDEAAASIGAQVIVTDAHHDVS
KQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGGE
VAILDGIPVVPILERVRGCRAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEASG
RDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVDVKRIDKGNAKTFSW

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=291, Percent_Identity=33.6769759450172, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790526, Length=267, Percent_Identity=29.2134831460674, Blast_Score=88, Evalue=9e-19,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32595; Mature: 32595

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKALD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHCCCCEEEEHHHHHH
EAAASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAV
HHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE
VVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGGEVAILDGIPVVPILERVRGCR
EEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
AALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEASG
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHCCC
RDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVD
CEEEEEECCCCHHHHHHHCCCCCHHHHCHHHCCHHHEEEEEEECCHHHCCCCCCCCCCCC
VKRIDKGNAKTFSW
HHCCCCCCCCCCCC
>Mature Secondary Structure
MHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKALD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHCCCCEEEEHHHHHH
EAAASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAV
HHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE
VVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGGEVAILDGIPVVPILERVRGCR
EEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
AALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEASG
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHCCC
RDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVD
CEEEEEECCCCHHHHHHHCCCCCHHHHCHHHCCHHHEEEEEEECCHHHCCCCCCCCCCCC
VKRIDKGNAKTFSW
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]