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The map label for this gene is ybdL [H]

Identifier: 53718874

GI number: 53718874

Start: 1423224

End: 1424378

Strand: Reverse

Name: ybdL [H]

Synonym: BPSL1239

Alternate gene names: 53718874

Gene position: 1424378-1423224 (Counterclockwise)

Preceding gene: 53718875

Following gene: 53718872

Centisome position: 34.96

GC content: 66.58

Gene sequence:

>1155_bases
ATGCCGACGACGCCCACTCTCCTCTCGCGCCTGCCCGAGGTCGGCACGACGATTTTCACGGTCATGAGCGCGCTCGCCGC
GGAAAAGGGCGCGGTCAATCTCGGCCAGGGCTTTCCCGACTTCGATTGCGATCCGCGCATCGTCGACGCGGTCGCGCACG
CGATGCGCGACGGCCGCAACCAGTATCCGCCGATGGCGGGCGTCGCGCCGCTGCGTGAAGCGATCGCCGACAAGATCGAG
CGGCTTTACGGCCGCCGCTACGATGCCGCGACCGAGATCACCGTGACGGCGGGCGCGACCCAGGCGCTCCTGACCGCGAT
CCTGTGCGCGGTGCATCCGGGCGACGAGGTGATCGTGATCGAGCCCACCTACGACAGCTACCTGCCGTCGATCGAGCTGG
CGGGCGCAACGCCCGTGTTCGTCACGCTGAACGCGCCCGACTACGCGATTCCGTTCGACAAGCTCGCCGCGGCGATCACG
CCGAAGACGCGCGCGATCCTGATCAACACGCCGCACAATCCGACGGGCACCGTCTGGCGCGAGGCGGACATGCGCGCGCT
CGAGGACATCGTGCGCGGCACCGGCCTGCTGATCGTGTCCGACGAGGTCTACGAGCACATGGTCTACGACGGCGCGCGGC
ACGAAAGCGTCGCCCGCTACCCGGAACTCGCCGCGCGCAGCATCATCGTGTCGAGCTTCGGCAAGACCTTTCACGTGACG
GGCTGGAAGATCGGCTACGTCGCCGCGCCCGCGCCGCTCACGGCCGAGTTCCGCAAGGTGCATCAGTTCAACGTGTTCAC
GGTCAATACGCCGATGCAATTCGGCCTCGCCGATTATCTGCGCGATCCCGAGCCGTATCTGACGCTGCCCGCGTTCTATC
AGCAAAAGCGCGACTTCTTCCGCGCCGGGCTCGCGAACACGCGCTTCGCGCTGCTGCCCTGCGCGGGGACATACTTCCAG
TGCGTCGATTATTCGGCGATCAGCGATCTGCCGGAAGCGGAGTTCGCAAAATGGCTGACGACCGAAATCGGCGTCGCCGC
GATTCCGGTATCGGCGTTCTATCACGAGCCGCATGAATCGGGCGTCGTGCGCTTTTGCTTCGCGAAGCGCGAAGACACGC
TCGCCACCGCGCTCGAGCGGCTCGCACGCCTGTAG

Upstream 100 bases:

>100_bases
CGCGCTCGCGGCCGACGCATCCGAGCCGGCGTAAGCGACGCACTCGCCCGAGCCGCCCCCACCCCTTTTCGCGCAAGCCA
TGATGAACGCACCGCACGAC

Downstream 100 bases:

>100_bases
CCTCCGACAAAACGCGCCGCGAACGCGCAGCACGCGCGCACGCGCCGCCGCGGGTAAGCGCGTGCCGGTGCGCGGAAGAA
ATGATCCTTCGAGCGAGCGA

Product: putative aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MPTTPTLLSRLPEVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPRIVDAVAHAMRDGRNQYPPMAGVAPLREAIADKIE
RLYGRRYDAATEITVTAGATQALLTAILCAVHPGDEVIVIEPTYDSYLPSIELAGATPVFVTLNAPDYAIPFDKLAAAIT
PKTRAILINTPHNPTGTVWREADMRALEDIVRGTGLLIVSDEVYEHMVYDGARHESVARYPELAARSIIVSSFGKTFHVT
GWKIGYVAAPAPLTAEFRKVHQFNVFTVNTPMQFGLADYLRDPEPYLTLPAFYQQKRDFFRAGLANTRFALLPCAGTYFQ
CVDYSAISDLPEAEFAKWLTTEIGVAAIPVSAFYHEPHESGVVRFCFAKREDTLATALERLARL

Sequences:

>Translated_384_residues
MPTTPTLLSRLPEVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPRIVDAVAHAMRDGRNQYPPMAGVAPLREAIADKIE
RLYGRRYDAATEITVTAGATQALLTAILCAVHPGDEVIVIEPTYDSYLPSIELAGATPVFVTLNAPDYAIPFDKLAAAIT
PKTRAILINTPHNPTGTVWREADMRALEDIVRGTGLLIVSDEVYEHMVYDGARHESVARYPELAARSIIVSSFGKTFHVT
GWKIGYVAAPAPLTAEFRKVHQFNVFTVNTPMQFGLADYLRDPEPYLTLPAFYQQKRDFFRAGLANTRFALLPCAGTYFQ
CVDYSAISDLPEAEFAKWLTTEIGVAAIPVSAFYHEPHESGVVRFCFAKREDTLATALERLARL
>Mature_383_residues
PTTPTLLSRLPEVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPRIVDAVAHAMRDGRNQYPPMAGVAPLREAIADKIER
LYGRRYDAATEITVTAGATQALLTAILCAVHPGDEVIVIEPTYDSYLPSIELAGATPVFVTLNAPDYAIPFDKLAAAITP
KTRAILINTPHNPTGTVWREADMRALEDIVRGTGLLIVSDEVYEHMVYDGARHESVARYPELAARSIIVSSFGKTFHVTG
WKIGYVAAPAPLTAEFRKVHQFNVFTVNTPMQFGLADYLRDPEPYLTLPAFYQQKRDFFRAGLANTRFALLPCAGTYFQC
VDYSAISDLPEAEFAKWLTTEIGVAAIPVSAFYHEPHESGVVRFCFAKREDTLATALERLARL

Specific function: Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine [H]

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=401, Percent_Identity=35.6608478802993, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI56713256, Length=402, Percent_Identity=35.5721393034826, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI95147551, Length=409, Percent_Identity=34.718826405868, Blast_Score=228, Evalue=7e-60,
Organism=Homo sapiens, GI169881279, Length=409, Percent_Identity=34.718826405868, Blast_Score=228, Evalue=7e-60,
Organism=Homo sapiens, GI169881281, Length=407, Percent_Identity=30.2211302211302, Blast_Score=179, Evalue=4e-45,
Organism=Homo sapiens, GI4507369, Length=217, Percent_Identity=26.2672811059908, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI1786816, Length=377, Percent_Identity=53.0503978779841, Blast_Score=413, Evalue=1e-117,
Organism=Escherichia coli, GI1788722, Length=386, Percent_Identity=25.9067357512953, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788627, Length=193, Percent_Identity=29.0155440414508, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787710, Length=299, Percent_Identity=26.7558528428094, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71994472, Length=416, Percent_Identity=34.8557692307692, Blast_Score=224, Evalue=6e-59,
Organism=Caenorhabditis elegans, GI71994476, Length=416, Percent_Identity=34.8557692307692, Blast_Score=224, Evalue=7e-59,
Organism=Caenorhabditis elegans, GI17567369, Length=399, Percent_Identity=32.5814536340852, Blast_Score=200, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17567663, Length=203, Percent_Identity=27.0935960591133, Blast_Score=75, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6322401, Length=392, Percent_Identity=32.6530612244898, Blast_Score=190, Evalue=3e-49,
Organism=Drosophila melanogaster, GI28573069, Length=414, Percent_Identity=35.2657004830918, Blast_Score=238, Evalue=5e-63,
Organism=Drosophila melanogaster, GI24646114, Length=414, Percent_Identity=35.2657004830918, Blast_Score=238, Evalue=5e-63,
Organism=Drosophila melanogaster, GI28573067, Length=414, Percent_Identity=35.2657004830918, Blast_Score=238, Evalue=5e-63,
Organism=Drosophila melanogaster, GI28573065, Length=414, Percent_Identity=35.2657004830918, Blast_Score=238, Evalue=5e-63,
Organism=Drosophila melanogaster, GI18859735, Length=205, Percent_Identity=30.2439024390244, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 42178; Mature: 42046

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTTPTLLSRLPEVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPRIVDAVAHAMRDGRN
CCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
QYPPMAGVAPLREAIADKIERLYGRRYDAATEITVTAGATQALLTAILCAVHPGDEVIVI
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEE
EPTYDSYLPSIELAGATPVFVTLNAPDYAIPFDKLAAAITPKTRAILINTPHNPTGTVWR
ECCHHHHCCCEEECCCCEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCEEH
EADMRALEDIVRGTGLLIVSDEVYEHMVYDGARHESVARYPELAARSIIVSSFGKTFHVT
HHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC
GWKIGYVAAPAPLTAEFRKVHQFNVFTVNTPMQFGLADYLRDPEPYLTLPAFYQQKRDFF
CEEEEEEECCCCCHHHHHHHHEEEEEEECCCHHHCHHHHHCCCCCCEECHHHHHHHHHHH
RAGLANTRFALLPCAGTYFQCVDYSAISDLPEAEFAKWLTTEIGVAAIPVSAFYHEPHES
HHCCCCCCEEEEECCCCHHHHHCHHHHHCCCHHHHHHHHHHHCCHHEEEHHHHHCCCCCC
GVVRFCFAKREDTLATALERLARL
CEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
PTTPTLLSRLPEVGTTIFTVMSALAAEKGAVNLGQGFPDFDCDPRIVDAVAHAMRDGRN
CCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
QYPPMAGVAPLREAIADKIERLYGRRYDAATEITVTAGATQALLTAILCAVHPGDEVIVI
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEE
EPTYDSYLPSIELAGATPVFVTLNAPDYAIPFDKLAAAITPKTRAILINTPHNPTGTVWR
ECCHHHHCCCEEECCCCEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCEEH
EADMRALEDIVRGTGLLIVSDEVYEHMVYDGARHESVARYPELAARSIIVSSFGKTFHVT
HHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC
GWKIGYVAAPAPLTAEFRKVHQFNVFTVNTPMQFGLADYLRDPEPYLTLPAFYQQKRDFF
CEEEEEEECCCCCHHHHHHHHEEEEEEECCCHHHCHHHHHCCCCCCEECHHHHHHHHHHH
RAGLANTRFALLPCAGTYFQCVDYSAISDLPEAEFAKWLTTEIGVAAIPVSAFYHEPHES
HHCCCCCCEEEEECCCCHHHHHCHHHHHCCCHHHHHHHHHHHCCHHEEEHHHHHCCCCCC
GVVRFCFAKREDTLATALERLARL
CEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]