| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53718763
Identifier: 53718763
GI number: 53718763
Start: 1310507
End: 1311775
Strand: Reverse
Name: 53718763
Synonym: BPSL1127
Alternate gene names: NA
Gene position: 1311775-1310507 (Counterclockwise)
Preceding gene: 53718764
Following gene: 53718762
Centisome position: 32.19
GC content: 70.76
Gene sequence:
>1269_bases ATGACGGTCCGGCATACGGTCAGCGCGCGTAGCCTGCGCGCCCTCGACTGGCTCAACTTCTTCGTCGCGAACGTGCAGAC AGGCTTCGGTCCGTTCATCGCGTCGTATCTCGCGTCGCACAAGTGGACGCAGGGCGAAATCGGCATGGTGCTGTCGATCG GCACGATCAGCGCGATGGTGAGCCAGGTGCCCGGCGGCGCGGCCGTCGATGCGCTGAAGAACAAGAAAGGCGCCGCCGCG TGGGCGATCGCCGCGATCATCCTGTCCGCGGTGCTGCTCGCCGCGAGCCCGACCGTCGTGCCCGTGATCGCGGCCGAGGT GTTCCACGGCTTCGCGAGCTGCATGCTCGTGCCGGCAATGGCGGCGATCTCGTTCGCGCTCGTCGGCCGCGAGAGCCTGG GCGACCGGCTCGGCCGCAACGCGCGCTGGGCGTCGCTCGGCAGCGCGGTCGCGGCGAGCCTGATGGGGCTCACGGGCGAG TACTTCTCCGCGCGCGCGGTGTTCTGGCTGACGGCGGCCCTCGCGCTGCCCGCGCTCGTCGCGCTCGCGATGATCGAGCC GACGCACCATCATCATCACGCGGCGCCACGCGCGTCGGCGCGAAGCGACGAAGCCGACGAAGACGAAGACGAAGAACGCG AAACGCTGCGCGAACTGCTGCGCGACAAGCGGATGCTGATCTTCGCCGCCTGCGTCGTGTTGTTCCATCTGTCGAACGCG GCGATGCTGAACCTCGCCGCGGGCGAAGTGACGGCGGGCATGGGCGAGAACGTGCAGCTCGTGATCGCCGCGTGCATCAT CGTCCCGCAGGCGATCGTCGCGATGCTTTCGCCGTGGGTCGGACGCTCCGCGCAGCGCTGGGGCCGCCGGCCGATCCTGC TGCTCGGTTTCGCCGCGCTGCCGCTGCGCGCGCTGCTGTTCGCCGGCGTCTCGAGCCCGTACCTGCTCGTGCCGGTGCAG ATGCTCGACGGCATCAGCGCCGCCGTGTTCGGCGTGATGCTGCCGCTCATCGCGGCGGACGTCGCGGGCGGCAAGGGGCG CTACAACCTGTGCATCGGGCTCTTCGGACTCGCGGCAGGCGTCGGCGCGACGCTCAGCACCGCGCTCGCCGGCTTCGCGG CCGACCACTTCGGCAACGCGATGAGCTTCTTCGGGCTCGCCGCCGCGGGCGCGCTCGCGACGCTGCTCGTGTGGTTCGCG ATGCCCGAGACGCGCGACGCGGCGCTCGCCGAAGACGCTCGGCACTCGAGCGCCGAGCCGGCGCAGTAA
Upstream 100 bases:
>100_bases CGCCGCCCTATGCGGGCGACAAGCCGATCCTCGCCGTCTCGCCCGCGGCCGGCGGCGCTCCCGCCGCCGCGCCGGCTACC GCTCGAGCAGGTGCGAAACG
Downstream 100 bases:
>100_bases CGTCCCGCCCGTGATGCGACGGCGCGCGGGACGCGATGCGGGATGCGGCGGCACATGCATGCGTGCGCCCGGCGGCGTTG CGGGCGATATGGTCGATATG
Product: putative ABC transporter integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MTVRHTVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAASLMGLTGE YFSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRASARSDEADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNA AMLNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQ MLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFA MPETRDAALAEDARHSSAEPAQ
Sequences:
>Translated_422_residues MTVRHTVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAASLMGLTGE YFSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRASARSDEADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNA AMLNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQ MLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFA MPETRDAALAEDARHSSAEPAQ >Mature_421_residues TVRHTVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAAW AIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAASLMGLTGEY FSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRASARSDEADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAA MLNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQM LDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAM PETRDAALAEDARHSSAEPAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 44033; Mature: 43902
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVRHTVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMV CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFALVGRESLGDRLGRNARWASLGSAVAASLMGLTGEYFSARAVFWLTAALALPALV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ALAMIEPTHHHHHAAPRASARSDEADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNA HHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AMLNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAAL HEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEHHHHHH PLRALLFAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAG HHHHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH VGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETRDAALAEDARHSSAEP HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC AQ CC >Mature Secondary Structure TVRHTVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMV CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFALVGRESLGDRLGRNARWASLGSAVAASLMGLTGEYFSARAVFWLTAALALPALV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ALAMIEPTHHHHHAAPRASARSDEADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNA HHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AMLNLAAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAAL HEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEHHHHHH PLRALLFAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAG HHHHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH VGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETRDAALAEDARHSSAEP HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC AQ CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]