| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53718742
Identifier: 53718742
GI number: 53718742
Start: 1278121
End: 1279953
Strand: Reverse
Name: 53718742
Synonym: BPSL1107
Alternate gene names: NA
Gene position: 1279953-1278121 (Counterclockwise)
Preceding gene: 53718744
Following gene: 53718741
Centisome position: 31.41
GC content: 70.1
Gene sequence:
>1833_bases ATGCCCGCCCTCATCGAAGACTACGCTCTCGTCGGCGACGGCCACACGGCCGCGCTGATTTCCCGCGACGGCTCGGTCGA CTGGCTGTGCTGGCCCCGTTTCGATTCGGGCGCGTGCTTCGCCGCGCTCGTCGGCACGCCCGAGCACGGCCGCTGGCTCG TCGCGCCCGCGGACGACGTGCGCGTGAGCGCGACGTCGCGCCGCTACCGCGGCGACACGCTGATCCTCGAAACCGACTAC GAGTGCGACGAAGGCGCCGTCACCGTGATCGATTTCATGCCGCCCGGCAGCGGCTGGTCCGAGCTCGTGCGCATCGTCGT CGGCCGGCGCGGCGAGATGCGCATGCAGATGCAGCTCGTGTTGCGCTTCGACTACGGCTTCTCGGTGCCGTGGGTCACGC GGCTGCCGCGCGAGGCGGGCGTGAAGGCGATCGCCGGCCCGGACACGGTCGTGCTGCGCACGCCCGTGCCGCTTTCGGGC GAGAACCTGCATACGGTGGCCGAATTCACGGTGAAGGCGGAGGAGCGCGTGCCGTTCTCGCTGTCGTACGCGCCGTCGCA TCTGCGGCTGCCGCCCGCGCGCGAGCCGCTGTCGATGCTCGCGCGCACCGAGAACTACTGGCTCGAATGGTCGGCGCGAT GCCCGCTGCGCGGCCGCTACGCGAGCGCCGTGCGACGCTCGCTGATCACGCTGAAGGCGCTCGCGTACGAGCCGACGGGC GGCATCGTCGCCGCGCCGACGACCTCGCTGCCCGAGCAGTTGGGCGGCACCCGCAACTGGGACTACCGCTATTGCTGGCT GCGCGACGCGACGATCACGCTGCTCGCGTTGATGCGCGGCGGCTACTACGACGAGGCGCGCGCGTGGCGTACGTGGCTCG GCCGCGTGATGGCGGGCTCGCCCGAGCAGATTCAGATCATGTACGGGATCGCGGGCGAGCGGCGCCTGCCCGAAATGGAG CTCGACTGGCTGCCGGGCTACCAGGATTCGCGGCCGGTGCGCATCGGCAACAACGCGGCGAACCAGTTGCAGCTCGACGT GTTCGGCGAGGTGATGTCCGCGCTGCACATCGCGCGCGTGGGCGGGCTGCAGGCGGACGACACGGTGTGGTCGGTCCAGA CGACGCTGCTCGCGCACCTCGAGAAGATCTGGCGCGAGCCGGACGAAGGCATCTGGGAGACGCGCGGCGGCCGCCGGCAT TTCACGTTCTCGAAAGTGATGGCGTGGGTCGCGTTCGACCGCGCGATCAAGTCGGCCGAGATGTTCCGCCTGTCCGCGCC GCTCGAGCGCTGGCGCGCGATCCGCGACGAGATCCACGCGGACGTTTGCGCGAACGGCTGGAATCCGCGGGTGCGCGCGT TCACGCAGAGCTATGGCAGCGACGCGCTCGACGCGAGCGTGCTGATGCTGCCGCTCGTCGGTTTCCTGCCGCCCGACGAT CCGCGCATCGCGGACACCGTCGAGGCGATCGAGCGCGGCCTGATGCGCGACGGCCTCGTGCTGCGCTACCATACGACCGA ATACGACGACGGCCTGCCGCCCGGCGAAGGCACGTTTCTCGCGTGCAGCTTCTGGCTCGTCGACAATCTCGCGCTCCTCG GCCGCATCGACGACGCGCACGCGCTCTTTCGCCGCCTGCTGTCGCTCACGAACGATCTCGGCTTGCTCGCCGAGGAATAC GATCCCGTGACGCGCCGCCAGGTAGGGAATTTCCCGCAGGCGTTCTCGCATGTCGGGCTCGTGCACACCGCGTTCAACCT GATGCATCACGAAGAGGAAATGCTGCGCGCGGCCGGCCAGCCTGCCGCGGCGGACGCCGTCGCCGGGCGCTAG
Upstream 100 bases:
>100_bases CGCCGTCCGCCGAGTATACGGGCCCGTGCTTGCCGCCGTACAGCGCGGCGCGAACGTGTCCAGATCGTGAACGACAAGGA TTGCTGGAGGATCGTCGCCC
Downstream 100 bases:
>100_bases GGCCCGTGCACGTTTGCACGGCAAACGTAAGACAAGGTCAGATGTCGATGCGACGCCCGGAAATGCGGGTTTGCTGCATT GCGACACCCCGGAATGTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Trehalose-Phosphatase; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Glucoamylase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose 6-Phosphatase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; HAD Family Hydrolase; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Protein; Trehalose-6-Phosphate Phophatase
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDVRVSATSRRYRGDTLILETDY ECDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLVLRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSG ENLHTVAEFTVKAEERVPFSLSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTG GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEME LDWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARVGGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRH FTFSKVMAWVAFDRAIKSAEMFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDD PRIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAHALFRRLLSLTNDLGLLAEEY DPVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQPAAADAVAGR
Sequences:
>Translated_610_residues MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDVRVSATSRRYRGDTLILETDY ECDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLVLRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSG ENLHTVAEFTVKAEERVPFSLSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTG GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEME LDWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARVGGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRH FTFSKVMAWVAFDRAIKSAEMFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDD PRIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAHALFRRLLSLTNDLGLLAEEY DPVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQPAAADAVAGR >Mature_609_residues PALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDVRVSATSRRYRGDTLILETDYE CDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLVLRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSGE NLHTVAEFTVKAEERVPFSLSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTGG IVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEMEL DWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARVGGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRHF TFSKVMAWVAFDRAIKSAEMFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDDP RIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAHALFRRLLSLTNDLGLLAEEYD PVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQPAAADAVAGR
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68232; Mature: 68100
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDV CCCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCC RVSATSRRYRGDTLILETDYECDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLV EEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE LRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSGENLHTVAEFTVKAEERVPFS EEECCCCCCCHHHHCCHHHCCEEECCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCEE LSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTG EEECCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCCC GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGS CEEECCCCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC PEQIQIMYGIAGERRLPEMELDWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARV CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHH GGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRHFTFSKVMAWVAFDRAIKSAE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH MFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDD HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC PRIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAH CCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCHHHHCCCCHHH ALFRRLLSLTNDLGLLAEEYDPVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQ HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PAAADAVAGR CCCCHHCCCC >Mature Secondary Structure PALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDV CCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCC RVSATSRRYRGDTLILETDYECDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLV EEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE LRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSGENLHTVAEFTVKAEERVPFS EEECCCCCCCHHHHCCHHHCCEEECCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCEE LSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTG EEECCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCCC GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGS CEEECCCCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC PEQIQIMYGIAGERRLPEMELDWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARV CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHH GGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRHFTFSKVMAWVAFDRAIKSAE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH MFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDD HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC PRIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAH CCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCHHHHCCCCHHH ALFRRLLSLTNDLGLLAEEYDPVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQ HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PAAADAVAGR CCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA