Click here to switch to the map view.

The map label for this gene is rnfB [H]

Identifier: 53718739

GI number: 53718739

Start: 1274538

End: 1275410

Strand: Reverse

Name: rnfB [H]

Synonym: BPSL1104

Alternate gene names: 53718739

Gene position: 1275410-1274538 (Counterclockwise)

Preceding gene: 53718741

Following gene: 53718738

Centisome position: 31.3

GC content: 73.42

Gene sequence:

>873_bases
GTGACCGATTCCAAGACCCTCGCGGATCGCATCGAAGATCTGCTTCCCCAGACGCAATGCACGAAGTGCGGCTACGACGG
CTGCCGTCCTTACGCGGAGGCGATCGCGGCCGGCACCGCCGGCTATGATCAGTGCCCGCCGGGCGGCGCCGAAGGCGTCG
CGCGGCTCGCGAAGCTGCTCGGCAAGCCGGTGATCCCGCTCAATCAGGCGCACGGCGTCGAGCGTGCGCGCCCCGTCGCG
TTCATCGACGAGCAGCTTTGCATCGGCTGCACGCTATGCATGCAGGCGTGCCCCGTCGACGCGATCGTCGGGGCACCGAA
GCAAATGCATACGATCGTCGCCGAGCTCTGCACCGGCTGCGACCTGTGCGTGCCGCCATGCCCGGTCGACTGCATCGCGA
TGATACCCGTGACGGGCGAGCGCACCGGCTGGGACGCGTGGTCGCAGCAGCAGGCCGATGCCGCGCGCGCGCGGCACGAT
GCGCGCGCGGCGCGCCTGAAGCGCGAGCGCGAAGCGGCCGAGGCGCGCGCGGCGGCGCGCCGCGCGGCAAGCGCCGCGGC
CGCTCACGCGCCCGCGTCGTCGGCGGCCGCCCCCGCCGCGCCGGCCGCCGACGACGCGGATGCGAAGAAGCGTGCGATCA
TCGCGGCGGCGCTCGAACGCGCGCGCAAGAAGAAGGAGGCGCTCGCCGCACAAGGCGCGGGGCCGAAGAACACCGAAGGC
GTGAGCGCCGCGGTGCAGGCGCAGATCGACGCGGCCGAAGCGCGGCGGCGCCGTCTCGCCGAGCAACGCGACGCGGCAGA
CGAACCCGGCCGCCCGGACGACGCGAACGCCGCGGGCGACGACGCGTCGCCGCCCTCGAAAACGAAACAGTGA

Upstream 100 bases:

>100_bases
TGCGAAAAATCGGCGATAATTGTTGTTTCGAGAGATATCCCGGCCGCGTACGGACGCCCGGCCGCCGCGCCGCGCCCACG
CGCCAGCCCACGTAGTCACA

Downstream 100 bases:

>100_bases
CCGCATGAACGCCACCAAACGACGCGCGATCTTCGAAACGCTGCAGAGCCTCAACCCGCATCCGACCACGGAACTCGAAT
ACACGACGCCGTTCGAGCTG

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MTDSKTLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYDQCPPGGAEGVARLAKLLGKPVIPLNQAHGVERARPVA
FIDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHD
ARAARLKREREAAEARAAARRAASAAAAHAPASSAAAPAAPAADDADAKKRAIIAAALERARKKKEALAAQGAGPKNTEG
VSAAVQAQIDAAEARRRRLAEQRDAADEPGRPDDANAAGDDASPPSKTKQ

Sequences:

>Translated_290_residues
MTDSKTLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYDQCPPGGAEGVARLAKLLGKPVIPLNQAHGVERARPVA
FIDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHD
ARAARLKREREAAEARAAARRAASAAAAHAPASSAAAPAAPAADDADAKKRAIIAAALERARKKKEALAAQGAGPKNTEG
VSAAVQAQIDAAEARRRRLAEQRDAADEPGRPDDANAAGDDASPPSKTKQ
>Mature_289_residues
TDSKTLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYDQCPPGGAEGVARLAKLLGKPVIPLNQAHGVERARPVAF
IDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHDA
RAARLKREREAAEARAAARRAASAAAAHAPASSAAAPAAPAADDADAKKRAIIAAALERARKKKEALAAQGAGPKNTEGV
SAAVQAQIDAAEARRRRLAEQRDAADEPGRPDDANAAGDDASPPSKTKQ

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=142, Percent_Identity=51.4084507042254, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 30100; Mature: 29969

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSKTLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYDQCPPGGAEGVARLAKLL
CCCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
GKPVIPLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGC
CCCCCCCCHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCC
DLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHDARAARLKREREAAEARAAAR
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAASAAAAHAPASSAAAPAAPAADDADAKKRAIIAAALERARKKKEALAAQGAGPKNTEG
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
VSAAVQAQIDAAEARRRRLAEQRDAADEPGRPDDANAAGDDASPPSKTKQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDSKTLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYDQCPPGGAEGVARLAKLL
CCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
GKPVIPLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGC
CCCCCCCCHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCC
DLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHDARAARLKREREAAEARAAAR
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAASAAAAHAPASSAAAPAAPAADDADAKKRAIIAAALERARKKKEALAAQGAGPKNTEG
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
VSAAVQAQIDAAEARRRRLAEQRDAADEPGRPDDANAAGDDASPPSKTKQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA