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The map label for this gene is ywbI [H]

Identifier: 53718711

GI number: 53718711

Start: 1242775

End: 1243737

Strand: Reverse

Name: ywbI [H]

Synonym: BPSL1074

Alternate gene names: 53718711

Gene position: 1243737-1242775 (Counterclockwise)

Preceding gene: 53718715

Following gene: 53718709

Centisome position: 30.52

GC content: 66.67

Gene sequence:

>963_bases
ATGCGCGCCGCCGCCGTCCGCTTCCTGAACGACCGTCTCGACTGGAACCTGTTGCGCACCTTCCTCGTCATCATGCAGGA
GCGCAGCGTGAGCCGCGCGGCCGCGCGGCTGCACGTCACGCAGCCGGCCGTGAGCCAGGCGCTCAAGCGGCTCGAGGAAA
CGCTCGGGCACACGCTGATCCGCCGCCGCGGCCCGCACTTCGAGCCGACGCAGGCGGGCGCCGAGGTGTACCGGATCGCG
AGCGACATCTACGGCACGATCTCGCGCCTGGACACCGAGCTCGACGACGCGGCGGCCGACCTGACGGGCACGATCCGGCT
GCTGTCGGTGAGCCGCATCGAATCGGGCGTCTACGATCTCTTTCTCGCCGACTTTCATCGGCAATATCCGCGCGTCGATC
TGCAGATCGAGGTGATGCGCTCGTCCGACATCATTTCGTCGCTGCTGCAGAAGACCGTGACAGCGGGCCTGAGCCTCTGC
CGCAATCCGGTCGACAAGCTCGCCCGCGCACCGTTCCTGCGGCAGCGCTATGCGATCTACTGCGGCCGGCACCATCGGCT
GTTCGGCCAGACGCAACTGACGATGAACGATCTGCTCGCGGAGAACTTCGTATCGTTCACGAGCGACCAGATCGGCGACA
GCCTGTCGCCGCTCACCGTGTTCCGCGACCAGAAGGGCTTCACGGGGCGCATCGTCGCGGCATCGCCGAGCCTCGACGAA
GTGCGTCGGCTCATCTTCGCGGGCTACGGGATCGGCTGCCTGCCCGAGCACATCGTGCGCGACGATCTCGCCCGTCAGCG
GCTCTGGCGACTGCCGCCGGACGAGGGGCTCATCGACGTCGACATCCACCTGCTGTGGCACCGGGAACGGAAAATGAACG
CGGCCGAACTCGCGTTCCTCGAAGGCTTCGAACGCGCGATGCAGCGCTACTCGTTCGACGAACGGCTGGCGATCAATCCT
TGA

Upstream 100 bases:

>100_bases
CGTTTTATCGCCGTCCATTAACTATTAGTCAAATTTCGACTTATTATTCACGGCATAACTTATATTAATGTCGATGTCGA
TTCGCCGGAGACCCCTCGCC

Downstream 100 bases:

>100_bases
CGCCTTGACGCGCCCGGGCGTGCAGGCGCGTCGCGGCCGTCGCGCCGGGCGCGAACCGGTCGCGCCGACCGGCCAGGCCC
ACCGGCCGTGCCTCGAGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLIRRRGPHFEPTQAGAEVYRIA
SDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDLFLADFHRQYPRVDLQIEVMRSSDIISSLLQKTVTAGLSLC
RNPVDKLARAPFLRQRYAIYCGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFLEGFERAMQRYSFDERLAINP

Sequences:

>Translated_320_residues
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLIRRRGPHFEPTQAGAEVYRIA
SDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDLFLADFHRQYPRVDLQIEVMRSSDIISSLLQKTVTAGLSLC
RNPVDKLARAPFLRQRYAIYCGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFLEGFERAMQRYSFDERLAINP
>Mature_320_residues
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLIRRRGPHFEPTQAGAEVYRIA
SDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDLFLADFHRQYPRVDLQIEVMRSSDIISSLLQKTVTAGLSLC
RNPVDKLARAPFLRQRYAIYCGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFLEGFERAMQRYSFDERLAINP

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=282, Percent_Identity=28.0141843971631, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787601, Length=290, Percent_Identity=23.1034482758621, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=297, Percent_Identity=26.5993265993266, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787530, Length=298, Percent_Identity=23.1543624161074, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=24.0418118466899, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787589, Length=140, Percent_Identity=30.7142857142857, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36518; Mature: 36518

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLI
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RRRGPHFEPTQAGAEVYRIASDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDL
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLADFHRQYPRVDLQIEVMRSSDIISSLLQKTVTAGLSLCRNPVDKLARAPFLRQRYAIY
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHH
CGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
HCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCEEEEECCCCHHH
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHCCHHHHHHH
EGFERAMQRYSFDERLAINP
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRAAAVRFLNDRLDWNLLRTFLVIMQERSVSRAAARLHVTQPAVSQALKRLEETLGHTLI
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RRRGPHFEPTQAGAEVYRIASDIYGTISRLDTELDDAAADLTGTIRLLSVSRIESGVYDL
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLADFHRQYPRVDLQIEVMRSSDIISSLLQKTVTAGLSLCRNPVDKLARAPFLRQRYAIY
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHH
CGRHHRLFGQTQLTMNDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVAASPSLDE
HCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCEEEEECCCCHHH
VRRLIFAGYGIGCLPEHIVRDDLARQRLWRLPPDEGLIDVDIHLLWHRERKMNAAELAFL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHCCHHHHHHH
EGFERAMQRYSFDERLAINP
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]