Click here to switch to the map view.

The map label for this gene is hsdS [C]

Identifier: 53718590

GI number: 53718590

Start: 1106431

End: 1107720

Strand: Reverse

Name: hsdS [C]

Synonym: BPSL0947

Alternate gene names: 53718590

Gene position: 1107720-1106431 (Counterclockwise)

Preceding gene: 53718591

Following gene: 53718589

Centisome position: 27.19

GC content: 54.03

Gene sequence:

>1290_bases
ATGAGCTTGCCCCAATATGCGAAATACAAGGATAGTGGGGTGCCATGGCTGGGACAAGTGCCCACACACTGGCTGGTGCA
GCGCCTCAAGGAGGTAATTGCATTCATCGAATCGGGTGTAAGCGTCAATGCCATTGATACGCCCGCTGGCGAAGGCGAGC
CTGGAGTTCTCAAAACGAGCTGCGTATATAGCGGCGAATTCACCCCGTCGGAAAACAAGTTAGTGGTACCCGAAGAACTG
GGCCGAGTGGCCTGCCCGGTAAAAGCAGGTACAGTGATAGTTAGCCGAATGAATACCCCGGACCTCGTTGGAGCGTCAGG
CGTAGTCCGCCAGAATTATGCTAACTTGTACTTACCGGACCGCCTGTGGCAAGTACATTTCAAGAATGCGTGCCCCGAAT
TTGTTCACTACTGGAGTCAAACGCATTCATATCGCGCGCAGGTCGAAAGCGCATGCGCAGGTACAAGCTCGAGTATGAAA
AATTTATCGCAAGATGAATTTCGTAGCTTTATCCTTCCCCTACCGCCGCCGTCAGAGCAATCCGCCATCGCCACCTTTCT
CAAACACGAGACGAGGAAAATTAACGCACTGATTGCCGAACAGGAAAAGCTGCTTACCCTATTGGCAGAAAAGCGCCAGG
CAACCATCTCGCGCGCCGTCACCCGTGGGCTCAATCCCGACGCACCGACGAAGGATTCCGGCGTCGCGTGGCTAAGGGAG
GTGCCGGCGCATTGGAATTTGAAGCCTATGAAGCGCGCCGTCGTATTTCAACGTGGACATGACCTCCCAAGCGAAGACAG
GGTCGAGGGAAATATCCCCGTTGTTTCGTCCGGCGGCATCTCGGGTTGGCACAATGCAGCGGCGACGAAAGGACCCACGA
TAGTTACTGGCCGGTATGGAACAATCGGTGAATTCGTGCTGCTTGAGGAAGATTGCTGGCCATTGAATACCGCTTTGTAC
ACCGTGCAAATGCACGACAATGTACCGAAGTACCTGTGGTACATGCTTCAGTCGTTAAAACACATATTCATTTTGAATTC
GCTAAAGTCAGCAGTTCCTGGAGTCGACAGAAACGACATCCATCCTGCTATCGTCTGCTTGCCACCGGCGGAAGAACAGC
CTGCAATCGTCGCTTTTCTTGATGCTGAAATCTCGAAGCTCGACGCGCTTAGGGCCGATGCCGAACGCGCCATTGACCTG
CTCAAGGAGCGCCGCAGCGCCCTGATTGCTGCTGCCGTCACCGGCAAAATCGACGTGCGCAATGTAATGTCACGGGAGCT
GGCCGCATGA

Upstream 100 bases:

>100_bases
ATTTCTACGTGTTCGAGCCCCCGCGCGACCTGCATACGATTGACGAAGAATTGAAGGCGGTGTCGGCCAACATCATGAGG
ATGCTTGAGGAGTTGGCGGA

Downstream 100 bases:

>100_bases
GCGACATCCAGTTATTCCGCCTGTCGAACGGTACCGCAAGCGAGTTACCGGGCCAGGCTGCAAACCTGGAAAAGCAGTTG
CAAGGTCTCATCGAAGCGAA

Product: putative type I restriction enzyme specificity protein

Products: NA

Alternate protein names: Restriction System DNA Specificity Domain Protein; Type I Restriction- System Specificity Subunit; Type I Restriction- System S Subunit; Type I Restriction- System Specificity Determinant; Restriction Endonuclease S Subunit; Type I Restriction- System; Type I Restriction S Subunit; Type I Restriction DNA Specificity Domain Protein; Type I Site-Specific Restriction- System S Subunit; Restriction System DNA Specificity Domain; Type I Restriction Specificity Protein; Type I Restriction- Subunit S; Type I Restriction EcoEI Specificity Protein; Type I Restriction-; Restriction- System Specificity Determinant; Type I Restriction Protein S; Restriction Endonuclease S Subunits-Like Protein; Type I Site-Specific Deoxyribonuclease; Restriction Endonuclease S Subunits; Type I Restriction- System Specifity Subunit; Type I Restriction- System Endonuclease S Subunit; Phosphoribosylformylglycinamidine Synthase; Restriction Endonuclease S Subunits-Like; Type I Restriction System DNA Specificity Domain Protein; HsdS Protein; Type I DNA Specificity S Subunit; Type I Restriction- Methylase S Subunit; Sty SBLI; Type I Restriction Specificity Subunit; Type I Restriction-Mod; Restriction System Type I; Type I Restriction Ecoeispecificity Protein; Type I Restriction- System Specificity Subunit M; Type I Restriction Ecocificity Protein; Type I Restriction System Specificity Protein HsdS; Type I Restriction- System Subunit S; Type I Restriction- System Specificity Subunit S; Type I Restriction; Type I Restriction- System S Subunit EcoA Family; Type 1 Restriction- System Endonuclease Subunit; Type I Restriction HindVIIP Specificity Protein

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSLPQYAKYKDSGVPWLGQVPTHWLVQRLKEVIAFIESGVSVNAIDTPAGEGEPGVLKTSCVYSGEFTPSENKLVVPEEL
GRVACPVKAGTVIVSRMNTPDLVGASGVVRQNYANLYLPDRLWQVHFKNACPEFVHYWSQTHSYRAQVESACAGTSSSMK
NLSQDEFRSFILPLPPPSEQSAIATFLKHETRKINALIAEQEKLLTLLAEKRQATISRAVTRGLNPDAPTKDSGVAWLRE
VPAHWNLKPMKRAVVFQRGHDLPSEDRVEGNIPVVSSGGISGWHNAAATKGPTIVTGRYGTIGEFVLLEEDCWPLNTALY
TVQMHDNVPKYLWYMLQSLKHIFILNSLKSAVPGVDRNDIHPAIVCLPPAEEQPAIVAFLDAEISKLDALRADAERAIDL
LKERRSALIAAAVTGKIDVRNVMSRELAA

Sequences:

>Translated_429_residues
MSLPQYAKYKDSGVPWLGQVPTHWLVQRLKEVIAFIESGVSVNAIDTPAGEGEPGVLKTSCVYSGEFTPSENKLVVPEEL
GRVACPVKAGTVIVSRMNTPDLVGASGVVRQNYANLYLPDRLWQVHFKNACPEFVHYWSQTHSYRAQVESACAGTSSSMK
NLSQDEFRSFILPLPPPSEQSAIATFLKHETRKINALIAEQEKLLTLLAEKRQATISRAVTRGLNPDAPTKDSGVAWLRE
VPAHWNLKPMKRAVVFQRGHDLPSEDRVEGNIPVVSSGGISGWHNAAATKGPTIVTGRYGTIGEFVLLEEDCWPLNTALY
TVQMHDNVPKYLWYMLQSLKHIFILNSLKSAVPGVDRNDIHPAIVCLPPAEEQPAIVAFLDAEISKLDALRADAERAIDL
LKERRSALIAAAVTGKIDVRNVMSRELAA
>Mature_428_residues
SLPQYAKYKDSGVPWLGQVPTHWLVQRLKEVIAFIESGVSVNAIDTPAGEGEPGVLKTSCVYSGEFTPSENKLVVPEELG
RVACPVKAGTVIVSRMNTPDLVGASGVVRQNYANLYLPDRLWQVHFKNACPEFVHYWSQTHSYRAQVESACAGTSSSMKN
LSQDEFRSFILPLPPPSEQSAIATFLKHETRKINALIAEQEKLLTLLAEKRQATISRAVTRGLNPDAPTKDSGVAWLREV
PAHWNLKPMKRAVVFQRGHDLPSEDRVEGNIPVVSSGGISGWHNAAATKGPTIVTGRYGTIGEFVLLEEDCWPLNTALYT
VQMHDNVPKYLWYMLQSLKHIFILNSLKSAVPGVDRNDIHPAIVCLPPAEEQPAIVAFLDAEISKLDALRADAERAIDLL
KERRSALIAAAVTGKIDVRNVMSRELAA

Specific function: The M And S Subunits Together Form A Methyltransferase (Mtase) That Methylates Two Adenine Residues In Complementary Strands Of A Bipartite DNA Recognition Sequence. In The Presence Of The R Subunit The Complex Can Also Act As An Endonuclease, Binding To

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47232; Mature: 47100

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPQYAKYKDSGVPWLGQVPTHWLVQRLKEVIAFIESGVSVNAIDTPAGEGEPGVLKTS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEE
CVYSGEFTPSENKLVVPEELGRVACPVKAGTVIVSRMNTPDLVGASGVVRQNYANLYLPD
EEECCCCCCCCCCEECHHHHCCEECCCCCCEEEEEECCCCCCCCCCCHHHHCCCCEECCH
RLWQVHFKNACPEFVHYWSQTHSYRAQVESACAGTSSSMKNLSQDEFRSFILPLPPPSEQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHEECCCCCCCCH
SAIATFLKHETRKINALIAEQEKLLTLLAEKRQATISRAVTRGLNPDAPTKDSGVAWLRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
VPAHWNLKPMKRAVVFQRGHDLPSEDRVEGNIPVVSSGGISGWHNAAATKGPTIVTGRYG
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCC
TIGEFVLLEEDCWPLNTALYTVQMHDNVPKYLWYMLQSLKHIFILNSLKSAVPGVDRNDI
CCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
HPAIVCLPPAEEQPAIVAFLDAEISKLDALRADAERAIDLLKERRSALIAAAVTGKIDVR
CCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCHHH
NVMSRELAA
HHHHHHHCC
>Mature Secondary Structure 
SLPQYAKYKDSGVPWLGQVPTHWLVQRLKEVIAFIESGVSVNAIDTPAGEGEPGVLKTS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEE
CVYSGEFTPSENKLVVPEELGRVACPVKAGTVIVSRMNTPDLVGASGVVRQNYANLYLPD
EEECCCCCCCCCCEECHHHHCCEECCCCCCEEEEEECCCCCCCCCCCHHHHCCCCEECCH
RLWQVHFKNACPEFVHYWSQTHSYRAQVESACAGTSSSMKNLSQDEFRSFILPLPPPSEQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHEECCCCCCCCH
SAIATFLKHETRKINALIAEQEKLLTLLAEKRQATISRAVTRGLNPDAPTKDSGVAWLRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
VPAHWNLKPMKRAVVFQRGHDLPSEDRVEGNIPVVSSGGISGWHNAAATKGPTIVTGRYG
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCC
TIGEFVLLEEDCWPLNTALYTVQMHDNVPKYLWYMLQSLKHIFILNSLKSAVPGVDRNDI
CCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
HPAIVCLPPAEEQPAIVAFLDAEISKLDALRADAERAIDLLKERRSALIAAAVTGKIDVR
CCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCHHH
NVMSRELAA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA