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The map label for this gene is radC [C]

Identifier: 53718558

GI number: 53718558

Start: 1069929

End: 1070639

Strand: Reverse

Name: radC [C]

Synonym: BPSL0917

Alternate gene names: 53718558

Gene position: 1070639-1069929 (Counterclockwise)

Preceding gene: 53718567

Following gene: 53718557

Centisome position: 26.28

GC content: 73.98

Gene sequence:

>711_bases
TTGTCATCCGCCGCGCAGCCGACGGGCGCGCCGCCGGCTACGGCCGCCGCGCGTCGCGGCCGCGATCTGCCGCGCGAGCG
CCTGCTCGCGCGCGGCCCCGCCGCGCTGTCCGACGCGGAACTCGTCGCGCTCCTGCTCGGCTCGGGCCTGCCCGGCCACG
ACGTGTTCGCGCTCGCGCACACGCTGCTCGCGCGCTTCGGCTCGTTGCGCGCGCTGCTCGACGCGGCGCCCGACGATTTC
AAGGGCCTGCGCGGCATCGGCCCCGCGCGCACCGCGATCCTCGTCGCGGTCGTCGAGCTCGCGCGGCGCGCGCTCGCCGA
GAAGGCCCGCGAGCGGCCGCTCGTCGATTCGCCGGGCGCGGTCGACGACTATCTGCGGCTGCTGATCGGCACGCGGCCGC
GCGAAGTGTTCGTCTGCCTCTTTCTCGACGCTCGGCACCGGCTCGTGCAGACGGAAGAAACCGCGCACGGCTCGCTCACG
CGGATGGCCGTCTATCCGCGCGAGATCGTGCGGCGCGCGCTCGCGCTGAACGCGGCGGCGCTCATCGTCGCGCACAATCA
TCCGTCGGGCGCGGTGCGACCGAGCGCCGCGGACCGGCGCCTCACGCGCGTGCTGCGCGACGCGCTCGCGCTCGTCGACA
TCAAGCTGATCGATCATTTCGTGGTCGGCGCGAGCGATACGTTTTCGTTCGCGCAAGCGGGCTGGATCTAG

Upstream 100 bases:

>100_bases
CGAAGACGTCGACGACGAGCGCGCGCGCGGGCGCCGCGCCGCCGCGCCGGCCGCCCCATCGTCCGCCGTCCCGTCATCCG
CGGCCCTATCATCCGCAGCC

Downstream 100 bases:

>100_bases
CGCGGCGCAAACGCCCCGCGCCGCGCCCGGGGCGTTTGCGCGGCCGGGCCCGGCGCCCCGCCGCATCCGCATGCGAAATT
GGGTTTGATTTTCCTGAAGT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSSAAQPTGAPPATAAARRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF
KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLDARHRLVQTEETAHGSLT
RMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAADRRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI

Sequences:

>Translated_236_residues
MSSAAQPTGAPPATAAARRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDF
KGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLDARHRLVQTEETAHGSLT
RMAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAADRRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI
>Mature_235_residues
SSAAQPTGAPPATAAARRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAHTLLARFGSLRALLDAAPDDFK
GLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGAVDDYLRLLIGTRPREVFVCLFLDARHRLVQTEETAHGSLTR
MAVYPREIVRRALALNAAALIVAHNHPSGAVRPSAADRRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=41.588785046729, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI2367100, Length=118, Percent_Identity=47.4576271186441, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1788997, Length=118, Percent_Identity=45.7627118644068, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1788312, Length=118, Percent_Identity=45.7627118644068, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25241; Mature: 25109

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAAQPTGAPPATAAARRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAH
CCCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
TLLARFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGA
HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VDDYLRLLIGTRPREVFVCLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAA
HHHHHHHHHCCCCHHEEEEEEHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHEE
LIVAHNHPSGAVRPSAADRRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
>Mature Secondary Structure 
SSAAQPTGAPPATAAARRGRDLPRERLLARGPAALSDAELVALLLGSGLPGHDVFALAH
CCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
TLLARFGSLRALLDAAPDDFKGLRGIGPARTAILVAVVELARRALAEKARERPLVDSPGA
HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VDDYLRLLIGTRPREVFVCLFLDARHRLVQTEETAHGSLTRMAVYPREIVRRALALNAAA
HHHHHHHHHCCCCHHEEEEEEHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHEE
LIVAHNHPSGAVRPSAADRRLTRVLRDALALVDIKLIDHFVVGASDTFSFAQAGWI
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA