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The map label for this gene is rpoH [H]

Identifier: 53718144

GI number: 53718144

Start: 554070

End: 555005

Strand: Reverse

Name: rpoH [H]

Synonym: BPSL0504

Alternate gene names: 53718144

Gene position: 555005-554070 (Counterclockwise)

Preceding gene: 53718147

Following gene: 53718143

Centisome position: 13.62

GC content: 65.71

Gene sequence:

>936_bases
GTGAGCAACGCATTGACCCTTCCGAACACACTGCGCCCGGCGTCCGCTAAGGCCGTATCGGCGGGCTCGCTGACGCTCGC
CTCTCATTCGATGCTGCCCGGCCATCTGGGCAACATCGACGCCTATATCCAGGCTGTGAACCGGATTCCGCTGCTAAGCG
CGGAGGAAGAGCGTCAATACGCGACCGAATACCGCGAGCAAAACAATCTCGACGCCGCGCGCCGGCTCGTGCTGTCGCAC
CTGCGGCTCGTCGTGTCGGTCGCGCGCAACTACCTCGGCTACGGCCTGCCGCACGGCGATCTGATCCAGGAAGGCAACAT
CGGCCTGATGAAGGCGGTCAAGCGGTTCGATCCCGCCCAGAACGTGCGCCTCGTGTCGTACGCGATCCACTGGATCAAGG
CCGAGATTCACGAGTACATCCTGCGCAACTGGCGCATGGTCAAGGTGGCGACGACGAAGGCGCAGCGCAAGCTGTTCTTC
AATCTGCGCAGCCACAAGAAGGGCACGCAGGCGTTCACGCCGGAGGAAATCGACGGCCTCGCGCAGGAGCTGAACGTCAA
GCGCGAGGAAGTGGCCGAGATGGAAACCCGCCTGTCGGGCGGCGACATCGCGCTCGAAGGCCAGATCGACGACGGCGAGG
AATCGTACGCGCCGATCGCCTATCTCGCCGATTCGCACAACGAGCCGACCGCCGTGCTCGCCGCGCGGCAGCGCGACATG
CTGCAGACGGACGGCATCGCGCGCGCGCTCGAATCGCTCGACGCACGCAGCCGCCGGATCATCGAGGCGCGCTGGCTGAA
CGTCGACGACGACGGCTCGGGCGGCTCGACGCTGCACGATCTCGCGGCCGAATTCGGCGTGTCGGCGGAGCGCATCCGCC
AGATCGAGGCAAGCGCGATGAAGAAGATGCGCACGGCGCTCGCCGCGTACGCATAA

Upstream 100 bases:

>100_bases
TCCTTCTAAGAGTTAGCACTCCAGTAGACGGAGTGCTAAGATTCATCGAGGAATCGCCCCGGCACAGGGGCTCGTCCCTG
ATTCCAAAGGAGTTTTCTAC

Downstream 100 bases:

>100_bases
CGCCCGAACGTGCGGCCCGCCCGGGCCGCGCCGAAACGGCAAAGCCCGCTGTCGCAGGACGGCGGGCTTTTTTATGCGCG
GCGCGGCGGCGCATGCCGCC

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSNALTLPNTLRPASAKAVSAGSLTLASHSMLPGHLGNIDAYIQAVNRIPLLSAEEERQYATEYREQNNLDAARRLVLSH
LRLVVSVARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFF
NLRSHKKGTQAFTPEEIDGLAQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDM
LQTDGIARALESLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAAYA

Sequences:

>Translated_311_residues
MSNALTLPNTLRPASAKAVSAGSLTLASHSMLPGHLGNIDAYIQAVNRIPLLSAEEERQYATEYREQNNLDAARRLVLSH
LRLVVSVARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFF
NLRSHKKGTQAFTPEEIDGLAQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDM
LQTDGIARALESLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAAYA
>Mature_310_residues
SNALTLPNTLRPASAKAVSAGSLTLASHSMLPGHLGNIDAYIQAVNRIPLLSAEEERQYATEYREQNNLDAARRLVLSHL
RLVVSVARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFN
LRSHKKGTQAFTPEEIDGLAQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDML
QTDGIARALESLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAAYA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=288, Percent_Identity=50.3472222222222, Blast_Score=277, Evalue=7e-76,
Organism=Escherichia coli, GI1789098, Length=271, Percent_Identity=31.3653136531365, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789448, Length=244, Percent_Identity=31.5573770491803, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 34486; Mature: 34354

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNALTLPNTLRPASAKAVSAGSLTLASHSMLPGHLGNIDAYIQAVNRIPLLSAEEERQY
CCCCCCCCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHH
ATEYREQNNLDAARRLVLSHLRLVVSVARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQ
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCC
NVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKKGTQAFTPEEIDGL
CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
AQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDM
HHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
LQTDGIARALESLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAM
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KKMRTALAAYA
HHHHHHHHHCC
>Mature Secondary Structure 
SNALTLPNTLRPASAKAVSAGSLTLASHSMLPGHLGNIDAYIQAVNRIPLLSAEEERQY
CCCCCCCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHH
ATEYREQNNLDAARRLVLSHLRLVVSVARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQ
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCC
NVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKKGTQAFTPEEIDGL
CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
AQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDM
HHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
LQTDGIARALESLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAM
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KKMRTALAAYA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]