| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is chb [H]
Identifier: 53718139
GI number: 53718139
Start: 546569
End: 549070
Strand: Reverse
Name: chb [H]
Synonym: BPSL0500
Alternate gene names: 53718139
Gene position: 549070-546569 (Counterclockwise)
Preceding gene: 53718140
Following gene: 53718132
Centisome position: 13.48
GC content: 72.06
Gene sequence:
>2502_bases ATGAACCGGGTACCGCATTCCCTGTGCGCCGCGCTATTGGCCGCCGCGACGCTGTTGCCCACGGCCTCGCGCGCGCAACT GCCCGCGCGCCCCACGGCCGGCGCGGCCGCGCCCGCGACGGCCGCGCCCGTGCGGCCCGCGTCCACGCCGGCCGAGCTCG CCGCGCGGCTCGCCAACGGCCTCGCGGTGCGCGTGGCCGTCGACAACAATCACGCGGCATCGGCCGGCGTGCCGTGCGCC GACCTCGGCGCGGACTGGGCGAGCTGCGCGACGGGCCGCCTGATCCTGCAGAATCGCGGCCACTCGCCCCTCACCGACGG CGGCTGGAAGCTCTATCTGCACAGCATCCGCCGGCTGCTCCGAATCGACCGCCCCGGCTTCACGCTGCGCCATCTGACGG GCGATCTGTACGAGCTGACGCCGCAGCCCGGCACGGTAAGGCTCGCGCAGGGCGAGCGCATCGAGCTGCCGTTCGTCGCC GAATACTGGCTGCGCCGCTACAGCGACGTGATCCCGCGCCCGTACGTGGTCGTCGACGGCGCGGCGCCCGCGGTGCTGCG CTACGACGATACCGACGACGAGCTGCGCTACGTCGAAACGCTGCCCGCCGACGCGCAGAACAACTCGCCCGGCAATGCGC CGCCCGCCGCCGCGCAGCCGGTGGCGAACCGCGCGCTGCCGAGCGTGAAGCGGCAGCGCGCGCTGCCCGGCGCGCTCGAT CTGCGCGGCGTCGAGCTGACGCTGCCGGAGCTGCCGTCCGCGCAGGTCGCGGCGCTGCGCGAACGCGCGGGCACGCTCGG CCTGGACGGCGCGCGCGTGCCGGTGTGGGGCGTCGTCGCGCCGCGCCGGCTGCCCGCCGACATCGCGGTGCCGGGCGGCT ACCGGCTCGCGATCGGCCCGCGCGGCGCGTTCATCGAGGGGGCCGATCGCGCGGGCCTCTACTACGGCGTGCAGACGCTC TTCTCGCTCGTGCCGGCCGGCGGCGCGACGGTGCCCGCGATGCTGATCGAAGACGCGCCGCGCTTCACGCACCGCGGGAT GCACGTCGATCTCGCGCGCAACTTCAAGCCGCCCGCCACGCTGCGCCGGCTGATCGACCAGATGAGCGCGTACAAGCTCA ACCGGCTGCATCTGCACCTGTCCGACGACGAGGGCTGGCGCATCGAGATTCCCGGCCTGCCCGAGCTGACCGACGTCGGC GCGCGCCGCTGCCACGACCCGAGCGAGACGCGCTGCCTGCTGCCGCAGCTCGGCTCGGGGCCCGACGATCGTTCGGGCGG CGGCTACCTGACGCGCGACGACTACGTCGCGCTGCTGCGCTACGCGGCCGAGCGCTTCGTCGAAGTGATCCCCGAGATCG ACATGCCCGCGCACTCGCGCGCGGCCGTCGTATCGATGGAGGCGCGCTATCGCCGCCTGCACGCGGCGGGCCGCGAGCGG GAAGCGAACGCGTATCGGCTGCTCGATGCGCAGGACACGTCGAACCTGCTGACCGTGCAGTTCTACGACCGGCGCAGCGA TCTGAACCCGTGCATGCCGGGCGCGCTGAACTTCGCGTCGAAGGTGATCCGCGAGATCGCGTCGATGCACGCGGACGCGC AAGCGCCGCTGCGGATCTGGCACTTCGGCGGCGACGAGGCGAAGAACATCCTGCTCGGCGCGGGCTTCCAGCCGCTCGAC GGCGCCGATCCCGGCAAGGGCCGCGTCGATCTCGCCGCGCAGGACAAGCCGTGGGCGCGCTCGCCCGCCTGTACGGCGCT GCTTCGGCGCGGCGAGATCAAATCGATCGACGAATTGCCGACGCGCTTCGCGAAGCAGGTCAGCGCGATCGTGAACGCGA ACGGAATCGGCACGATGGCCGCGTGGCAGGACGGCATCAAGCACGCGAGCGGGCCGCGGGAGTTCAGCACGCGGCACGTG ATGGTGTCGCTGTGGGACACCATCTTCTGGGGCGCGTCCGACAGCGCGCGCGATCTGAGCGCGAAGGGCTACCGGACCGT GCTCGCGCTGCCCGATTACCTGTACTTCGATTTCCCGTACACGCGCAATCCGCGCGAGCGCGGCTATTACTGGGGCTCGC AGGCGACGGACGAGTACAAGGTGTTCTCGCTCGCGCCGGAGAACCTGCCGCAGAACGCCGAGGTGTTCGGCGATCGCGAC GGCAACCCGTTCGAGGTGACGAGCGCGGGCGCGGCGCCGAGCATCGAGGGCATCCAGGGGCAGGCGTGGGGCGAGGTGAT GCGCAACGGGCAACTGCTCGAATACATGGTGTATCCTCGCCTTCTCGCGCTCGCCGAGCGCGCGTGGCACAAGGCCGACT GGGAACTGCCCTACGCGGCCGGCGTGCGCTACAAGCTCGGCGACACGCATCACGTCGACACGGCCGCGCTCGAGCGCGAC TGGGCGGGCTTCGCGACGGTGCTCAAGCAGCGCGAACTGCCGAAGCTCGAGCGTGCGGGCATCGGGTATCGCAAGCCCAC GTTTACGCTGACGGGCGAATGA
Upstream 100 bases:
>100_bases GCGCGGCACCCGAGCCTACCCCGCAGCTTCCTTGAAAGACCCGATCGCAGCGACGTATTTCCACGGCGTCGTATCGCCGT TTTTTTGCCAAGGAACGCCC
Downstream 100 bases:
>100_bases CGGGACGATGATGGGCCGATCGCATCGGTGACGAACGGGCCGGGCGACGCGCCGCGCGCGGCCGGCCCGCTCGTCACGCG CATCGTCTCGCGAGGCGGCG
Product: putative chitobiase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MNRVPHSLCAALLAAATLLPTASRAQLPARPTAGAAAPATAAPVRPASTPAELAARLANGLAVRVAVDNNHAASAGVPCA DLGADWASCATGRLILQNRGHSPLTDGGWKLYLHSIRRLLRIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELPFVA EYWLRRYSDVIPRPYVVVDGAAPAVLRYDDTDDELRYVETLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALPGALD LRGVELTLPELPSAQVAALRERAGTLGLDGARVPVWGVVAPRRLPADIAVPGGYRLAIGPRGAFIEGADRAGLYYGVQTL FSLVPAGGATVPAMLIEDAPRFTHRGMHVDLARNFKPPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDVG ARRCHDPSETRCLLPQLGSGPDDRSGGGYLTRDDYVALLRYAAERFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAGRER EANAYRLLDAQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIASMHADAQAPLRIWHFGGDEAKNILLGAGFQPLD GADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSIDELPTRFAKQVSAIVNANGIGTMAAWQDGIKHASGPREFSTRHV MVSLWDTIFWGASDSARDLSAKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFGDRD GNPFEVTSAGAAPSIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELPYAAGVRYKLGDTHHVDTAALERD WAGFATVLKQRELPKLERAGIGYRKPTFTLTGE
Sequences:
>Translated_833_residues MNRVPHSLCAALLAAATLLPTASRAQLPARPTAGAAAPATAAPVRPASTPAELAARLANGLAVRVAVDNNHAASAGVPCA DLGADWASCATGRLILQNRGHSPLTDGGWKLYLHSIRRLLRIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELPFVA EYWLRRYSDVIPRPYVVVDGAAPAVLRYDDTDDELRYVETLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALPGALD LRGVELTLPELPSAQVAALRERAGTLGLDGARVPVWGVVAPRRLPADIAVPGGYRLAIGPRGAFIEGADRAGLYYGVQTL FSLVPAGGATVPAMLIEDAPRFTHRGMHVDLARNFKPPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDVG ARRCHDPSETRCLLPQLGSGPDDRSGGGYLTRDDYVALLRYAAERFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAGRER EANAYRLLDAQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIASMHADAQAPLRIWHFGGDEAKNILLGAGFQPLD GADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSIDELPTRFAKQVSAIVNANGIGTMAAWQDGIKHASGPREFSTRHV MVSLWDTIFWGASDSARDLSAKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFGDRD GNPFEVTSAGAAPSIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELPYAAGVRYKLGDTHHVDTAALERD WAGFATVLKQRELPKLERAGIGYRKPTFTLTGE >Mature_833_residues MNRVPHSLCAALLAAATLLPTASRAQLPARPTAGAAAPATAAPVRPASTPAELAARLANGLAVRVAVDNNHAASAGVPCA DLGADWASCATGRLILQNRGHSPLTDGGWKLYLHSIRRLLRIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELPFVA EYWLRRYSDVIPRPYVVVDGAAPAVLRYDDTDDELRYVETLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALPGALD LRGVELTLPELPSAQVAALRERAGTLGLDGARVPVWGVVAPRRLPADIAVPGGYRLAIGPRGAFIEGADRAGLYYGVQTL FSLVPAGGATVPAMLIEDAPRFTHRGMHVDLARNFKPPATLRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDVG ARRCHDPSETRCLLPQLGSGPDDRSGGGYLTRDDYVALLRYAAERFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAGRER EANAYRLLDAQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIASMHADAQAPLRIWHFGGDEAKNILLGAGFQPLD GADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSIDELPTRFAKQVSAIVNANGIGTMAAWQDGIKHASGPREFSTRHV MVSLWDTIFWGASDSARDLSAKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFGDRD GNPFEVTSAGAAPSIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELPYAAGVRYKLGDTHHVDTAALERD WAGFATVLKQRELPKLERAGIGYRKPTFTLTGE
Specific function: Digests the beta-1,4-glycosidic bonds in N- acetylglucosamine (GlcNAc) oligomers (mainly dimers) [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Drosophila melanogaster, GI17933586, Length=489, Percent_Identity=24.3353783231084, Blast_Score=82, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 90963; Mature: 90963
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRVPHSLCAALLAAATLLPTASRAQLPARPTAGAAAPATAAPVRPASTPAELAARLANG CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC LAVRVAVDNNHAASAGVPCADLGADWASCATGRLILQNRGHSPLTDGGWKLYLHSIRRLL EEEEEEECCCCCCCCCCCHHHHCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH RIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELPFVAEYWLRRYSDVIPRPYVVVDG HCCCCCCCHHHHCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHCCCCEEEECC AAPAVLRYDDTDDELRYVETLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALPGALD CCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC LRGVELTLPELPSAQVAALRERAGTLGLDGARVPVWGVVAPRRLPADIAVPGGYRLAIGP CCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEECCCCEEEEECC RGAFIEGADRAGLYYGVQTLFSLVPAGGATVPAMLIEDAPRFTHRGMHVDLARNFKPPAT CCCEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHCCEEEEHHCCCCCHHH LRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDVGARRCHDPSETRCLLPQLGSG HHHHHHHHHHCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEECCCCCCC PDDRSGGGYLTRDDYVALLRYAAERFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAGRER CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCCCCC EANAYRLLDAQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIASMHADAQAPLRIW CCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE HFGGDEAKNILLGAGFQPLDGADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSIDELP ECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHH TRFAKQVSAIVNANGIGTMAAWQDGIKHASGPREFSTRHVMVSLWDTIFWGASDSARDLS HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC AKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFGDRD CCCCEEEEECCCEEEEECCCCCCCHHCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC GNPFEVTSAGAAPSIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELPYAA CCCEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHC GVRYKLGDTHHVDTAALERDWAGFATVLKQRELPKLERAGIGYRKPTFTLTGE CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCC >Mature Secondary Structure MNRVPHSLCAALLAAATLLPTASRAQLPARPTAGAAAPATAAPVRPASTPAELAARLANG CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC LAVRVAVDNNHAASAGVPCADLGADWASCATGRLILQNRGHSPLTDGGWKLYLHSIRRLL EEEEEEECCCCCCCCCCCHHHHCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH RIDRPGFTLRHLTGDLYELTPQPGTVRLAQGERIELPFVAEYWLRRYSDVIPRPYVVVDG HCCCCCCCHHHHCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHCCCCEEEECC AAPAVLRYDDTDDELRYVETLPADAQNNSPGNAPPAAAQPVANRALPSVKRQRALPGALD CCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC LRGVELTLPELPSAQVAALRERAGTLGLDGARVPVWGVVAPRRLPADIAVPGGYRLAIGP CCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEECCCCEEEEECC RGAFIEGADRAGLYYGVQTLFSLVPAGGATVPAMLIEDAPRFTHRGMHVDLARNFKPPAT CCCEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHCCEEEEHHCCCCCHHH LRRLIDQMSAYKLNRLHLHLSDDEGWRIEIPGLPELTDVGARRCHDPSETRCLLPQLGSG HHHHHHHHHHCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEECCCCCCC PDDRSGGGYLTRDDYVALLRYAAERFVEVIPEIDMPAHSRAAVVSMEARYRRLHAAGRER CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCCCCC EANAYRLLDAQDTSNLLTVQFYDRRSDLNPCMPGALNFASKVIREIASMHADAQAPLRIW CCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE HFGGDEAKNILLGAGFQPLDGADPGKGRVDLAAQDKPWARSPACTALLRRGEIKSIDELP ECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHH TRFAKQVSAIVNANGIGTMAAWQDGIKHASGPREFSTRHVMVSLWDTIFWGASDSARDLS HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC AKGYRTVLALPDYLYFDFPYTRNPRERGYYWGSQATDEYKVFSLAPENLPQNAEVFGDRD CCCCEEEEECCCEEEEECCCCCCCHHCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC GNPFEVTSAGAAPSIEGIQGQAWGEVMRNGQLLEYMVYPRLLALAERAWHKADWELPYAA CCCEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHC GVRYKLGDTHHVDTAALERDWAGFATVLKQRELPKLERAGIGYRKPTFTLTGE CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8621090; 8673609 [H]