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The map label for this gene is lysA [H]

Identifier: 53718125

GI number: 53718125

Start: 528356

End: 529552

Strand: Reverse

Name: lysA [H]

Synonym: BPSL0486

Alternate gene names: 53718125

Gene position: 529552-528356 (Counterclockwise)

Preceding gene: 53718126

Following gene: 53718124

Centisome position: 13.0

GC content: 70.51

Gene sequence:

>1197_bases
ATGAACACTGACACGATCGGATCCGCGCCGCACGCCGCGGCCGACGCCGGGAACGCCGAATGGCTCGACGGGCTCGACAC
GCCCTGCTACGTGTTCGACCCGCAATGCGTGCTCGCCGGCTACGCCGCGCTGCGCGCGGCGCTCGGCACGCGCCTCGTCG
TGTCGCTGAAGGCGAACTCGCATGCGGACCTGTTCCTGCGCTGCGCGCACGCGTTCGAAGACGGCATCGAGCTCGCGAGC
CAGGGCGAGCTCGACACCGTCGTCGGGCGCGGCAAGCACGTGAAGTACCTGAACAACCCCGCGATGGGCGATGCGCTGAT
GCGCGCGGGCATCGCGTCGCGCTGCCATTTCATCCTCGACGGGCCGGACATGGTGCGCCGCTTCATCGCGCTCGCGTCCG
GCAAGGAGACCGAGGACGTGATGCTGCGCATCAACGCGGGCGCGCTGCTCGGCGCGCACGCGCCGAAATCGCTGCGCGAC
CATTTCGGCATGACGCCCGCGGAGGCGCTCGGCATGGCGAACCTGCTCACGCAGGCGGGCCGCCGCGTGGCGGGGCTGCA
CGCGTTCGTCGGCTCGGGCAATTTTCGCGCCGGCCCGACGAAGGGCGGCGACGCGGATTCGGCCGATCTCGCGTGGGCGC
TCGCGCAGCTCGCCGAGCAGATCGAGGCGCTCGTGCGCACGCCCGTCACGCATCTGAACCTGGGCGGCGGGTTTTCGGAA
AAAGGCCACGACGACGCCACCTTCGAGCGCTACCGCGCGCGCATCGCCCCGCTCGCGAAGCGCTACACGCTCGTGCACGA
AGCGGGCCGCGCGATCTTCGCGAACGCGGGCGTGTTCGTCACGCGCGTGCGCGCGGTCAAGGTCTGGGACGACCGCGTGA
TCGCCGTGTGCGACGGCGGCATGAGCCACAACTTCCTGCTCGCGAAAACGGAAGCCGTCCTGAAGACCTGGGCGGCGCCG
ACGCTCGTGCCGGCCGGCGCCGCCGACGCGCATCGTGCGCCGAACGCGCGGCCGATCACGTTCGTCGGCAACACCTGCAA
CCGCGCCGACGTGATCGGCCGGCTCGAGCGTCATCCGCGGCTGCCGCAGCCGGGCGACTTCGTCGTGTTCTCGCAATGCG
GCGCCTATCACCACTCGTACACCGTGAGCGGCTTCCTGTCGCACAAGCCGGCTCAGGTCTACATCCGTCAGGCATGA

Upstream 100 bases:

>100_bases
CGGCACGTGATGGGCGTCATGCAGTCGAACGTCGGCGCGTTCGCCGCCGTCGCGCTGCATCCGCTCGAAGCCGCTTCGTC
GTCCACTCCTGCCGAGGCCT

Downstream 100 bases:

>100_bases
GAGCGTCATGAATCCACACATCCGACTCGCCGACCTCCTCGACTCCGCCGCCGCGCAGCGGCCCGACGGCATCGCGATCG
CCGAGCCGCGGCGGCGCGTG

Product: putative pyridoxal-dependent decarboxylase

Products: NA

Alternate protein names: DAP decarboxylase [H]

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MNTDTIGSAPHAAADAGNAEWLDGLDTPCYVFDPQCVLAGYAALRAALGTRLVVSLKANSHADLFLRCAHAFEDGIELAS
QGELDTVVGRGKHVKYLNNPAMGDALMRAGIASRCHFILDGPDMVRRFIALASGKETEDVMLRINAGALLGAHAPKSLRD
HFGMTPAEALGMANLLTQAGRRVAGLHAFVGSGNFRAGPTKGGDADSADLAWALAQLAEQIEALVRTPVTHLNLGGGFSE
KGHDDATFERYRARIAPLAKRYTLVHEAGRAIFANAGVFVTRVRAVKVWDDRVIAVCDGGMSHNFLLAKTEAVLKTWAAP
TLVPAGAADAHRAPNARPITFVGNTCNRADVIGRLERHPRLPQPGDFVVFSQCGAYHHSYTVSGFLSHKPAQVYIRQA

Sequences:

>Translated_398_residues
MNTDTIGSAPHAAADAGNAEWLDGLDTPCYVFDPQCVLAGYAALRAALGTRLVVSLKANSHADLFLRCAHAFEDGIELAS
QGELDTVVGRGKHVKYLNNPAMGDALMRAGIASRCHFILDGPDMVRRFIALASGKETEDVMLRINAGALLGAHAPKSLRD
HFGMTPAEALGMANLLTQAGRRVAGLHAFVGSGNFRAGPTKGGDADSADLAWALAQLAEQIEALVRTPVTHLNLGGGFSE
KGHDDATFERYRARIAPLAKRYTLVHEAGRAIFANAGVFVTRVRAVKVWDDRVIAVCDGGMSHNFLLAKTEAVLKTWAAP
TLVPAGAADAHRAPNARPITFVGNTCNRADVIGRLERHPRLPQPGDFVVFSQCGAYHHSYTVSGFLSHKPAQVYIRQA
>Mature_398_residues
MNTDTIGSAPHAAADAGNAEWLDGLDTPCYVFDPQCVLAGYAALRAALGTRLVVSLKANSHADLFLRCAHAFEDGIELAS
QGELDTVVGRGKHVKYLNNPAMGDALMRAGIASRCHFILDGPDMVRRFIALASGKETEDVMLRINAGALLGAHAPKSLRD
HFGMTPAEALGMANLLTQAGRRVAGLHAFVGSGNFRAGPTKGGDADSADLAWALAQLAEQIEALVRTPVTHLNLGGGFSE
KGHDDATFERYRARIAPLAKRYTLVHEAGRAIFANAGVFVTRVRAVKVWDDRVIAVCDGGMSHNFLLAKTEAVLKTWAAP
TLVPAGAADAHRAPNARPITFVGNTCNRADVIGRLERHPRLPQPGDFVVFSQCGAYHHSYTVSGFLSHKPAQVYIRQA

Specific function: Unknown

COG id: COG0019

COG function: function code E; Diaminopimelate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009006
- InterPro:   IPR002986
- InterPro:   IPR022643
- InterPro:   IPR022644
- InterPro:   IPR000183 [H]

Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]

EC number: =4.1.1.20 [H]

Molecular weight: Translated: 42501; Mature: 42501

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS00879 ODR_DC_2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTDTIGSAPHAAADAGNAEWLDGLDTPCYVFDPQCVLAGYAALRAALGTRLVVSLKANS
CCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCEEEEEEECCC
HADLFLRCAHAFEDGIELASQGELDTVVGRGKHVKYLNNPAMGDALMRAGIASRCHFILD
CHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEC
GPDMVRRFIALASGKETEDVMLRINAGALLGAHAPKSLRDHFGMTPAEALGMANLLTQAG
CHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHC
RRVAGLHAFVGSGNFRAGPTKGGDADSADLAWALAQLAEQIEALVRTPVTHLNLGGGFSE
CHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
KGHDDATFERYRARIAPLAKRYTLVHEAGRAIFANAGVFVTRVRAVKVWDDRVIAVCDGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEEECCCEEEEECCC
MSHNFLLAKTEAVLKTWAAPTLVPAGAADAHRAPNARPITFVGNTCNRADVIGRLERHPR
CCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC
LPQPGDFVVFSQCGAYHHSYTVSGFLSHKPAQVYIRQA
CCCCCCEEEEECCCCCCCCEEEEHHHCCCCEEEEEECC
>Mature Secondary Structure
MNTDTIGSAPHAAADAGNAEWLDGLDTPCYVFDPQCVLAGYAALRAALGTRLVVSLKANS
CCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCEEEEEEECCC
HADLFLRCAHAFEDGIELASQGELDTVVGRGKHVKYLNNPAMGDALMRAGIASRCHFILD
CHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEC
GPDMVRRFIALASGKETEDVMLRINAGALLGAHAPKSLRDHFGMTPAEALGMANLLTQAG
CHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHC
RRVAGLHAFVGSGNFRAGPTKGGDADSADLAWALAQLAEQIEALVRTPVTHLNLGGGFSE
CHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
KGHDDATFERYRARIAPLAKRYTLVHEAGRAIFANAGVFVTRVRAVKVWDDRVIAVCDGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEEECCCEEEEECCC
MSHNFLLAKTEAVLKTWAAPTLVPAGAADAHRAPNARPITFVGNTCNRADVIGRLERHPR
CCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC
LPQPGDFVVFSQCGAYHHSYTVSGFLSHKPAQVYIRQA
CCCCCCEEEEECCCCCCCCEEEEHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]