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The map label for this gene is slmA [H]

Identifier: 53717840

GI number: 53717840

Start: 205721

End: 206410

Strand: Reverse

Name: slmA [H]

Synonym: BPSL0198

Alternate gene names: 53717840

Gene position: 206410-205721 (Counterclockwise)

Preceding gene: 53717841

Following gene: 53717839

Centisome position: 5.07

GC content: 68.26

Gene sequence:

>690_bases
ATGCAGCCGACTCACCCGCATGACCCGGCAGTAACCGCAGCCGCGGAAAACGAACGCAGCGCCGCCACCGCGAACCGCAC
GCGCCCGAAGCCGGGCGAGCGCCGCGTGCATATCCTGCAGACGCTCGCGTCGATGCTCGAAGCGCCGAAGAGCGAGAAGA
TCACGACGGCGGCGCTCGCCGCCCGCCTCGACGTGTCGGAGGCCGCGCTGTACCGGCATTTCTCGAGCAAGGCCCAGATG
TTCGAAGGCCTGATCGAATTCATCGAGGAAACGTTCTTCGGGCTCGTCAACCAGATCGCCGCGAACGAGCCGAACGGCGT
GCTGCAGGCGCGCTCGATCGCGTTGATGCTGCTCAATTTCTCCGCGAAGAATCCCGGCATGACGCGCGTGCTGACGGGCG
AGGCGCTCGTCGGCGAACACGAGCGCCTCGCCGAGCGCGTCAATCAGATGCTCGAGCGGGTCGAGGCGTCGATCAAGCAA
TGCCTGCGCGTCGCGCTCCTCGAAGCCCAAGCGCATGCGGCCGGCGGCGCGCCGCCGCCCGTTCCGCTGCCGGACGACTA
CGATCCGGCGCTGCGCGCGAGCCTCGTCATCAGCTACGTGCTCGGCCGCTGGCACCGCTATGCGAAGAGCGGCTTCACGA
AGGCGCCCGGCGAGCACGCCGACGCGCAGCTGCGGCTGATCCTGCAGTAA

Upstream 100 bases:

>100_bases
TGCCCGGCCATCTGCCAAGCTACGGACGACCGCACTATGTCGATCGTCGCATTGGTTCGCTAAAATCGCTGCGATTGGGC
ACTCGATCGGGGCGACGAAA

Downstream 100 bases:

>100_bases
CGGGCCGCGAGGCCGCGGACGGAGCCGACGCCCGGGCGGCAAGGCCGCAAAGGGCATGTCCGGCCGCGCCGGTACGCCGA
CGCGCCGGTGAGCCCGCCGG

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MQPTHPHDPAVTAAAENERSAATANRTRPKPGERRVHILQTLASMLEAPKSEKITTAALAARLDVSEAALYRHFSSKAQM
FEGLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNFSAKNPGMTRVLTGEALVGEHERLAERVNQMLERVEASIKQ
CLRVALLEAQAHAAGGAPPPVPLPDDYDPALRASLVISYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ

Sequences:

>Translated_229_residues
MQPTHPHDPAVTAAAENERSAATANRTRPKPGERRVHILQTLASMLEAPKSEKITTAALAARLDVSEAALYRHFSSKAQM
FEGLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNFSAKNPGMTRVLTGEALVGEHERLAERVNQMLERVEASIKQ
CLRVALLEAQAHAAGGAPPPVPLPDDYDPALRASLVISYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ
>Mature_229_residues
MQPTHPHDPAVTAAAENERSAATANRTRPKPGERRVHILQTLASMLEAPKSEKITTAALAARLDVSEAALYRHFSSKAQM
FEGLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNFSAKNPGMTRVLTGEALVGEHERLAERVNQMLERVEASIKQ
CLRVALLEAQAHAAGGAPPPVPLPDDYDPALRASLVISYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=195, Percent_Identity=43.5897435897436, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25000; Mature: 25000

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTHPHDPAVTAAAENERSAATANRTRPKPGERRVHILQTLASMLEAPKSEKITTAALA
CCCCCCCCCCEEHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ARLDVSEAALYRHFSSKAQMFEGLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
SAKNPGMTRVLTGEALVGEHERLAERVNQMLERVEASIKQCLRVALLEAQAHAAGGAPPP
CCCCCCCEEEEECCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VPLPDDYDPALRASLVISYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MQPTHPHDPAVTAAAENERSAATANRTRPKPGERRVHILQTLASMLEAPKSEKITTAALA
CCCCCCCCCCEEHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ARLDVSEAALYRHFSSKAQMFEGLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
SAKNPGMTRVLTGEALVGEHERLAERVNQMLERVEASIKQCLRVALLEAQAHAAGGAPPP
CCCCCCCEEEEECCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VPLPDDYDPALRASLVISYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA