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The map label for this gene is motY [H]

Identifier: 52843156

GI number: 52843156

Start: 3352158

End: 3353057

Strand: Reverse

Name: motY [H]

Synonym: lpg2962

Alternate gene names: 52843156

Gene position: 3353057-3352158 (Counterclockwise)

Preceding gene: 52843159

Following gene: 52843155

Centisome position: 98.68

GC content: 40.0

Gene sequence:

>900_bases
TTGGATGAGCAAAAAATGATTTCAGAGCATTTTATATGCAAGAAGGCAAAAATTATTGCAATGAGTTCTTTATTCATTAC
TACTGTCGTCTTTGCTGCTCCCTCTATCCAATACGCAAGCCCTATGGGAGAAGAAAATTGGCGTATGACAGGCAATCCTC
TTCGATGTGGCTTGTCATTGACGATTCCAAATTATGGTATTGGCTACTTTGAGCAATACGCTACCCAATCCCCTCATTTC
ATTCTGCGTAAATGGGATCAAGTTCAACGGGTTTTACCTGCTCAAATTGTAGCAAGTCCCCCAGTGTGGAAACCGTTATT
AACCAGATCTTATCTGGTAACCCGAACTTATATTAAACCCGGGGAGTATGGACTATTTTTAAATCGACAGCCCGCTTTAA
AATTATTGACGTTTTTATCGCAAGGATATCAGGCAAGCTTTAACTATTTATCAGAGGAAGGATTTCGCACTACGGTTACA
CTCTCACCTATTCGGTTTCAAAAAGTGTATTCACAATATCAACGTTGTCTGAGTGGCCTGTTGCCTTTCAACTATGAGGA
TGTAAAAGAAAGCGTGTTTCATTTTGGGGTGGATAGTAAGTTATTGTCTGATGCTGATAAAGTGCAATTACGACGGATTG
CCCAATACGTGGATGCTGATGTACAAATTGATGCCATTAAGATTATTGGTCATGCTGACGATAGCGGCCGTAAAGGTTAC
AATAATGCCATTTCACAATATCGAGCAGAGTCTGTGAAAAATTATTTGATTAGGCTTGGAGTACCTCAAAGAAAACTATC
AATAACATGGGTAGGAGCTCTGCAACCGATAGCCAGGAATGATACTGACGAGGGGAGAGCTGCTAACAGACGTGTTGTTG
TGACATTGATAAAAAAATAA

Upstream 100 bases:

>100_bases
GATGGAGATGCCAATCGTCAGGGCGATTAATTATCAGAGTTTGCATAATAAAGGTTCCTGCATTATTGCCGATAAAAGAG
AATAACATGAATTAGGCAAT

Downstream 100 bases:

>100_bases
ATTTTGTGATTAAAAAAGTATCTTTTCATGATGGCATTTCATCCTCGAAAACCCCCTTCTTGGTCAACAAATTTCATTTG
AAAGAGACATGATAATAATG

Product: hypothetical protein

Products: NA

Alternate protein names: Polar flagellum motor protein [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDEQKMISEHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSLTIPNYGIGYFEQYATQSPHF
ILRKWDQVQRVLPAQIVASPPVWKPLLTRSYLVTRTYIKPGEYGLFLNRQPALKLLTFLSQGYQASFNYLSEEGFRTTVT
LSPIRFQKVYSQYQRCLSGLLPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDAIKIIGHADDSGRKGY
NNAISQYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK

Sequences:

>Translated_299_residues
MDEQKMISEHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSLTIPNYGIGYFEQYATQSPHF
ILRKWDQVQRVLPAQIVASPPVWKPLLTRSYLVTRTYIKPGEYGLFLNRQPALKLLTFLSQGYQASFNYLSEEGFRTTVT
LSPIRFQKVYSQYQRCLSGLLPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDAIKIIGHADDSGRKGY
NNAISQYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK
>Mature_299_residues
MDEQKMISEHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSLTIPNYGIGYFEQYATQSPHF
ILRKWDQVQRVLPAQIVASPPVWKPLLTRSYLVTRTYIKPGEYGLFLNRQPALKLLTFLSQGYQASFNYLSEEGFRTTVT
LSPIRFQKVYSQYQRCLSGLLPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDAIKIIGHADDSGRKGY
NNAISQYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK

Specific function: Plays the role of a stator in the sodium flagellar motor, stabilizing the force-generating unit through direct interaction with the cell wall. Involved in adherence and invasion of fish cell line [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 34059; Mature: 34059

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQKMISEHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEECCCCEEEEEEE
TIPNYGIGYFEQYATQSPHFILRKWDQVQRVLPAQIVASPPVWKPLLTRSYLVTRTYIKP
ECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHEEEEEECC
GEYGLFLNRQPALKLLTFLSQGYQASFNYLSEEGFRTTVTLSPIRFQKVYSQYQRCLSGL
CCEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCC
LPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDAIKIIGHADDSGRKGY
CCCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCH
NNAISQYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MDEQKMISEHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEECCCCEEEEEEE
TIPNYGIGYFEQYATQSPHFILRKWDQVQRVLPAQIVASPPVWKPLLTRSYLVTRTYIKP
ECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHEEEEEECC
GEYGLFLNRQPALKLLTFLSQGYQASFNYLSEEGFRTTVTLSPIRFQKVYSQYQRCLSGL
CCEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCC
LPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDAIKIIGHADDSGRKGY
CCCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCH
NNAISQYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA