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The map label for this gene is 52843050

Identifier: 52843050

GI number: 52843050

Start: 3230767

End: 3231693

Strand: Reverse

Name: 52843050

Synonym: lpg2854

Alternate gene names: NA

Gene position: 3231693-3230767 (Counterclockwise)

Preceding gene: 52843051

Following gene: 52843049

Centisome position: 95.11

GC content: 38.51

Gene sequence:

>927_bases
ATGATGTGGCGGGTTTTAACTATTGTGGCAGCTGCACTAATATCCAATCAACTTAAGGCATTTAGTTGGTCTGATTTATG
GTTTACTCCCAATCAACAAGCTCAACATTTGATGGAAAAGGGACAATTTGCAAAAGCTAAAGATCTTTTTGAGCGCAATG
ACTGGGCTGCAAGCGCAGCATACAGAGCAGGAGATTATGAACAGGCAGCCAAATTATTCAATGAGTTAAAAACGGAACAA
GGCTACTATAATCAGGGAAATGCTCTAGCACACTTAGGGAAATATGAGGAAGCAATACGAGCATATGACAAAGCCTTGGC
ATTTAATCCAAATAATCAGGATGCTTTATATAATCGAAAATTAATCAGTGAATTGTTGAAGAAAGATAAAGAAAAGAAAA
AAAGCCAGAATCAGCAGGATAAGGATCAACAGAACCAGGATCAACAAAATCAGGACAAGCAAAACAAAGATCAACAGAAC
CAGGATCAGCAAAATCAGGACAAGCAAAACAAAGATCAACGGAACCAGGATCAGCAAAATCAGGACAAGCAAAACAAAGA
TCAACAGAACCAGGACAAGCAAAATCAGGACAAGCAGAACAAAAATCAGCAGAACCAGGATCAACAAAATCAGGACAAGC
AAAACAAAGATCAACAGAACCAGGATCAGCAAAATCAGGACAAGCAAAACAAAGATCAGCAGAACCAGGATCAGCAAAAT
CAGGACAAGCAAAATAAGGCACAACAGAATAAAGTTCAAAATAAAAAAAATGACAAGCAAGAGGGAGAAATTCAGTCCGA
AGCGAATCAGGAGAAACAACTTGCTAAAGAACAATGGTTGCGATTAATACCTGATGATCCGGGTGGATTAATGAGAGAAA
AATTTTTACGTGATCATTTACGTAGAGAGCGTGGGTGGTATCAATGA

Upstream 100 bases:

>100_bases
ATATCCCATTATGGCGTGATGAAGGCCGCTGGTTCTTGATTCCCGCATTGCTTTTATTATTACCCGTATTTCAGCGAGGT
TGGATGCAAAGGGTGACGAT

Downstream 100 bases:

>100_bases
AGAAATTAATGTTATGGGGTTTATTGAGTTTATTTTCATCATTATCTTTTGCAGAAATCAAAGTTGAACTTGAGCCTTCG
CAAGTCACAATGGGAGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: TPR Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain Protein; Transmembrane Protein; TPR Repeat; Tetratricopeptide Repeat Family; Von Willebrand Factor Type A; Von Willebrand Factor Type A Domain-Containing Protein; Tetratricopeptide Repeat And VWA Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MMWRVLTIVAAALISNQLKAFSWSDLWFTPNQQAQHLMEKGQFAKAKDLFERNDWAASAAYRAGDYEQAAKLFNELKTEQ
GYYNQGNALAHLGKYEEAIRAYDKALAFNPNNQDALYNRKLISELLKKDKEKKKSQNQQDKDQQNQDQQNQDKQNKDQQN
QDQQNQDKQNKDQRNQDQQNQDKQNKDQQNQDKQNQDKQNKNQQNQDQQNQDKQNKDQQNQDQQNQDKQNKDQQNQDQQN
QDKQNKAQQNKVQNKKNDKQEGEIQSEANQEKQLAKEQWLRLIPDDPGGLMREKFLRDHLRRERGWYQ

Sequences:

>Translated_308_residues
MMWRVLTIVAAALISNQLKAFSWSDLWFTPNQQAQHLMEKGQFAKAKDLFERNDWAASAAYRAGDYEQAAKLFNELKTEQ
GYYNQGNALAHLGKYEEAIRAYDKALAFNPNNQDALYNRKLISELLKKDKEKKKSQNQQDKDQQNQDQQNQDKQNKDQQN
QDQQNQDKQNKDQRNQDQQNQDKQNKDQQNQDKQNQDKQNKNQQNQDQQNQDKQNKDQQNQDQQNQDKQNKDQQNQDQQN
QDKQNKAQQNKVQNKKNDKQEGEIQSEANQEKQLAKEQWLRLIPDDPGGLMREKFLRDHLRRERGWYQ
>Mature_308_residues
MMWRVLTIVAAALISNQLKAFSWSDLWFTPNQQAQHLMEKGQFAKAKDLFERNDWAASAAYRAGDYEQAAKLFNELKTEQ
GYYNQGNALAHLGKYEEAIRAYDKALAFNPNNQDALYNRKLISELLKKDKEKKKSQNQQDKDQQNQDQQNQDKQNKDQQN
QDQQNQDKQNKDQRNQDQQNQDKQNKDQQNQDKQNQDKQNKNQQNQDQQNQDKQNKDQQNQDQQNQDKQNKDQQNQDQQN
QDKQNKAQQNKVQNKKNDKQEGEIQSEANQEKQLAKEQWLRLIPDDPGGLMREKFLRDHLRRERGWYQ

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36709; Mature: 36709

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMWRVLTIVAAALISNQLKAFSWSDLWFTPNQQAQHLMEKGQFAKAKDLFERNDWAASAA
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YRAGDYEQAAKLFNELKTEQGYYNQGNALAHLGKYEEAIRAYDKALAFNPNNQDALYNRK
HHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LISELLKKDKEKKKSQNQQDKDQQNQDQQNQDKQNKDQQNQDQQNQDKQNKDQRNQDQQN
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDKQNKDQQNQDKQNQDKQNKNQQNQDQQNQDKQNKDQQNQDQQNQDKQNKDQQNQDQQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDKQNKAQQNKVQNKKNDKQEGEIQSEANQEKQLAKEQWLRLIPDDPGGLMREKFLRDHL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RRERGWYQ
HHHCCCCC
>Mature Secondary Structure
MMWRVLTIVAAALISNQLKAFSWSDLWFTPNQQAQHLMEKGQFAKAKDLFERNDWAASAA
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YRAGDYEQAAKLFNELKTEQGYYNQGNALAHLGKYEEAIRAYDKALAFNPNNQDALYNRK
HHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LISELLKKDKEKKKSQNQQDKDQQNQDQQNQDKQNKDQQNQDQQNQDKQNKDQRNQDQQN
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDKQNKDQQNQDKQNQDKQNKNQQNQDQQNQDKQNKDQQNQDQQNQDKQNKDQQNQDQQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDKQNKAQQNKVQNKKNDKQEGEIQSEANQEKQLAKEQWLRLIPDDPGGLMREKFLRDHL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RRERGWYQ
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA