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The map label for this gene is cspA [H]

Identifier: 52843046

GI number: 52843046

Start: 3225308

End: 3225523

Strand: Reverse

Name: cspA [H]

Synonym: lpg2850

Alternate gene names: 52843046

Gene position: 3225523-3225308 (Counterclockwise)

Preceding gene: 52843047

Following gene: 52843044

Centisome position: 94.93

GC content: 42.13

Gene sequence:

>216_bases
ATGTCTGTGAAAGAAACTGGCCACGTTAAGTGGTTTAATGATGATAAAGGTTATGGCTTCATTAGTCGTGATAATGGTCA
AGACGATGTATTTGTACACTTCCGCTCTATCGTTAGCAACGCTGGGCGCAAAACTTTGCTAGAGGGACAACGAGTGGAGT
TCCTTGTTACTAAGGGAGCGAAAGGTTTGCAAGCAGAAGAAGTAACTGCTATATAA

Upstream 100 bases:

>100_bases
ATATTTCCCTTGGTCGTGAATTTCTCATCGATGATTACATTGTATTTTTTCTCTTATCGCTCATTACAAGTGTTTGTTTA
ATTTTATTTGGAACTTTGAA

Downstream 100 bases:

>100_bases
TCCCGTATTCACTGAATTACCTTCCTCTTTGTCTAAAAAAACGAAGAGGAAGGTGGTTTTTTAATGCCAATAAATTGCAT
TAATTTTTTCAATTATTTTT

Product: cold shock transcriptional regulator CspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MSVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSNAGRKTLLEGQRVEFLVTKGAKGLQAEEVTAI

Sequences:

>Translated_71_residues
MSVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSNAGRKTLLEGQRVEFLVTKGAKGLQAEEVTAI
>Mature_70_residues
SVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSNAGRKTLLEGQRVEFLVTKGAKGLQAEEVTAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=73, Percent_Identity=45.2054794520548, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI224586882, Length=73, Percent_Identity=46.5753424657534, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=60, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1789979, Length=71, Percent_Identity=57.7464788732394, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=71, Percent_Identity=54.9295774647887, Blast_Score=75, Evalue=8e-16,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=57.3529411764706, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=56.5217391304348, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1787834, Length=71, Percent_Identity=54.9295774647887, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=43.2835820895522, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7929; Mature: 7798

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSNAGRKTLLEGQRVEFLVTKGA
CCCCCCCCEEEEECCCCCEEEECCCCCCCEEEHHHHHHCCCCCCCCCCCCEEEEEEECCC
KGLQAEEVTAI
CCCCCCCEECC
>Mature Secondary Structure 
SVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSNAGRKTLLEGQRVEFLVTKGA
CCCCCCCEEEEECCCCCEEEECCCCCCCEEEHHHHHHCCCCCCCCCCCCEEEEEEECCC
KGLQAEEVTAI
CCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]