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The map label for this gene is vipD

Identifier: 52843027

GI number: 52843027

Start: 3202105

End: 3203970

Strand: Direct

Name: vipD

Synonym: lpg2831

Alternate gene names: NA

Gene position: 3202105-3203970 (Clockwise)

Preceding gene: 52843024

Following gene: 52843034

Centisome position: 94.24

GC content: 40.78

Gene sequence:

>1866_bases
TTGAAACTTGCTGAAATTATGACAAAAAGCCGTAAATTAAAAAGGAATTTACTGGAAATATCAAAGACTGAGGCAGGACA
ATATTCTGTTAGTGCGCCTGAGCACAAAGGGTTGGTGCTAAGTGGCGGCGGAGCGAAAGGCATATCCTATTTGGGTATGA
TTCAAGCCTTACAAGAGCGCGGAAAAATAAAAAATCTGACCCATGTTAGCGGAGCATCTGCCGGAGCAATGACGGCGAGT
ATATTAGCCGTTGGCATGGATATCAAAGACATCAAAAAACTGATTGAGGGATTGGACATCACCAAGCTATTAGATAATAG
CGGAGTAGGTTTTCGTGCGAGAGGAGATCGTTTTCGTAACATTCTGGATGTCATTTACATGATGCAAATGAAAAAACATT
TAGAAAGCGTGCAGCAACCCATTCCTCCAGAACAACAGATGAATTATGGCATACTTAAACAAAAAATAGCTCTCTATGAA
GACAAGTTATCAAGAGCAGGGATTGTGATAAATAATGTAGACGATATTATCAACTTGACAAAATCAGTAAAAGATTTGGA
AAAACTTGATAAAGCACTTAATAGTATTCCTACTGAGTTGAAAGGCGCCAAAGGAGAACAACTTGAAAATCCTCGTCTAA
CTCTTGGTGACTTGGGCCGCTTAAGAGAGTTGCTGCCTGAGGAAAATAAACATCTAATTAAAAACTTGTCTGTAGTTGTA
ACTAATCAAACAAAGCATGAGCTGGAACGCTACAGTGAAGACACAACTCCTCAACAATCTATAGCACAAGTTGTCCAGTG
GTCTGGGGCCCATCCGGTACTTTTCGTACCTGGCAGAAATGCCAAGGGTGAATACATCGCTGATGGAGGAATTCTGGACA
ATATGCCGGAAATTGAAGGGCTTGACAGAGAAGAGGTGCTTTGTGTCAAAGCAGAGGCAGGCACCGCATTTGAAGATCGC
GTTAATAAGGCCAAGCAAAGTGCTATGGAAGCGATAAGCTGGTTTAAGGCACGCATGGATTCTTTGGTTGAGGCTACAAT
AGGTGGAAAATGGCTTCATGCCACTTCATCCGTGTTAAATCGTGAAAAAGTCTATTATAACATTGATAATATGATTTACA
TTAATACAGGGGAAGTCACAACCACAAACACCTCTCCAACACCTGAACAAAGAGCGCGCGCTGTAAAAAATGGCTACGAT
CAGACAATGCAATTACTGGATTCTCACAAGCAAACATTTGATCATCCATTAATGGCAATACTTTATATCGGACATGATAA
ACTCAAGGATGCATTGATTGATGAGAAATCAGAGAAAGAGATTTTTGAGGCATCAGCGCATGCACAAGCTATTTTGCATC
TTCAAGAACAAATCGTCAAAGAAATGAATGATGGTGATTACAGTAGCGTGCAAAATTATTTAGATCAAATTGAAGACATT
CTGACAGTCGATGCCAAAATGGATGACATCCAGAAAGAGAAGGCCTTTGCCCTCTGCATTAAACAAGTTAATTTTTTAAG
TGAAGGAAAACTGGAAACTTACTTGAATAAAGTTGAGGCAGAAGCTAAAGCAGCCGCTGAGCCTAGCTGGGCCACAAAGA
TATTGAATCTTCTTTGGGCACCAATTGAATGGGTTGTTTCCCTGTTCAAAGGCCCTGCCCAAGACTTTAAAGTTGAAGTT
CAACCTGAACCGGTTAAGGTTTCTACCTCTGAAAATCAGGAAACAGTCTCTAATCAAAAGGATATCAATCCTGCCGTAGA
GTATAGAAAAATCATAGCTGAAGTAAGGCGCGAGCATACCGATCCATCCCCATCCCTGCAAGAAAAAGAAAGGGTTGGTC
TTTCAACCACATTTGGCGGCCATTAA

Upstream 100 bases:

>100_bases
GAGGAAGGTCCCCCAATCAATTGCTCACATAATTGTTTGTTTAAAAATCACAAAGTCAAAATTAACTACTATAATAAAAC
TATAAGAAATTAAATTCTGT

Downstream 100 bases:

>100_bases
CTCTGTTCTACATATTAGTTTATTAACAAGAATAATTCCGGAACATTTTTCTATTCATTCCTGGCTCAAGTGTGTTCTTC
TTTCCTGCATGGTTTCTATG

Product: VipD

Products: NA

Alternate protein names: Type Three Secretion System Effector Protein

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MKLAEIMTKSRKLKRNLLEISKTEAGQYSVSAPEHKGLVLSGGGAKGISYLGMIQALQERGKIKNLTHVSGASAGAMTAS
ILAVGMDIKDIKKLIEGLDITKLLDNSGVGFRARGDRFRNILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYE
DKLSRAGIVINNVDDIINLTKSVKDLEKLDKALNSIPTELKGAKGEQLENPRLTLGDLGRLRELLPEENKHLIKNLSVVV
TNQTKHELERYSEDTTPQQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIEGLDREEVLCVKAEAGTAFEDR
VNKAKQSAMEAISWFKARMDSLVEATIGGKWLHATSSVLNREKVYYNIDNMIYINTGEVTTTNTSPTPEQRARAVKNGYD
QTMQLLDSHKQTFDHPLMAILYIGHDKLKDALIDEKSEKEIFEASAHAQAILHLQEQIVKEMNDGDYSSVQNYLDQIEDI
LTVDAKMDDIQKEKAFALCIKQVNFLSEGKLETYLNKVEAEAKAAAEPSWATKILNLLWAPIEWVVSLFKGPAQDFKVEV
QPEPVKVSTSENQETVSNQKDINPAVEYRKIIAEVRREHTDPSPSLQEKERVGLSTTFGGH

Sequences:

>Translated_621_residues
MKLAEIMTKSRKLKRNLLEISKTEAGQYSVSAPEHKGLVLSGGGAKGISYLGMIQALQERGKIKNLTHVSGASAGAMTAS
ILAVGMDIKDIKKLIEGLDITKLLDNSGVGFRARGDRFRNILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYE
DKLSRAGIVINNVDDIINLTKSVKDLEKLDKALNSIPTELKGAKGEQLENPRLTLGDLGRLRELLPEENKHLIKNLSVVV
TNQTKHELERYSEDTTPQQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIEGLDREEVLCVKAEAGTAFEDR
VNKAKQSAMEAISWFKARMDSLVEATIGGKWLHATSSVLNREKVYYNIDNMIYINTGEVTTTNTSPTPEQRARAVKNGYD
QTMQLLDSHKQTFDHPLMAILYIGHDKLKDALIDEKSEKEIFEASAHAQAILHLQEQIVKEMNDGDYSSVQNYLDQIEDI
LTVDAKMDDIQKEKAFALCIKQVNFLSEGKLETYLNKVEAEAKAAAEPSWATKILNLLWAPIEWVVSLFKGPAQDFKVEV
QPEPVKVSTSENQETVSNQKDINPAVEYRKIIAEVRREHTDPSPSLQEKERVGLSTTFGGH
>Mature_621_residues
MKLAEIMTKSRKLKRNLLEISKTEAGQYSVSAPEHKGLVLSGGGAKGISYLGMIQALQERGKIKNLTHVSGASAGAMTAS
ILAVGMDIKDIKKLIEGLDITKLLDNSGVGFRARGDRFRNILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYE
DKLSRAGIVINNVDDIINLTKSVKDLEKLDKALNSIPTELKGAKGEQLENPRLTLGDLGRLRELLPEENKHLIKNLSVVV
TNQTKHELERYSEDTTPQQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIEGLDREEVLCVKAEAGTAFEDR
VNKAKQSAMEAISWFKARMDSLVEATIGGKWLHATSSVLNREKVYYNIDNMIYINTGEVTTTNTSPTPEQRARAVKNGYD
QTMQLLDSHKQTFDHPLMAILYIGHDKLKDALIDEKSEKEIFEASAHAQAILHLQEQIVKEMNDGDYSSVQNYLDQIEDI
LTVDAKMDDIQKEKAFALCIKQVNFLSEGKLETYLNKVEAEAKAAAEPSWATKILNLLWAPIEWVVSLFKGPAQDFKVEV
QPEPVKVSTSENQETVSNQKDINPAVEYRKIIAEVRREHTDPSPSLQEKERVGLSTTFGGH

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69283; Mature: 69283

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAEIMTKSRKLKRNLLEISKTEAGQYSVSAPEHKGLVLSGGGAKGISYLGMIQALQER
CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHC
GKIKNLTHVSGASAGAMTASILAVGMDIKDIKKLIEGLDITKLLDNSGVGFRARGDRFRN
CCCCCCHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHH
ILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYEDKLSRAGIVINNVDDIINLT
HHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHH
KSVKDLEKLDKALNSIPTELKGAKGEQLENPRLTLGDLGRLRELLPEENKHLIKNLSVVV
HHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCEEEE
TNQTKHELERYSEDTTPQQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIEG
ECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCC
LDREEVLCVKAEAGTAFEDRVNKAKQSAMEAISWFKARMDSLVEATIGGKWLHATSSVLN
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
REKVYYNIDNMIYINTGEVTTTNTSPTPEQRARAVKNGYDQTMQLLDSHKQTFDHPLMAI
CCCEEEECCCEEEEECCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH
LYIGHDKLKDALIDEKSEKEIFEASAHAQAILHLQEQIVKEMNDGDYSSVQNYLDQIEDI
HHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LTVDAKMDDIQKEKAFALCIKQVNFLSEGKLETYLNKVEAEAKAAAEPSWATKILNLLWA
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
PIEWVVSLFKGPAQDFKVEVQPEPVKVSTSENQETVSNQKDINPAVEYRKIIAEVRREHT
HHHHHHHHHCCCCCCCEEEECCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCC
DPSPSLQEKERVGLSTTFGGH
CCCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKLAEIMTKSRKLKRNLLEISKTEAGQYSVSAPEHKGLVLSGGGAKGISYLGMIQALQER
CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHC
GKIKNLTHVSGASAGAMTASILAVGMDIKDIKKLIEGLDITKLLDNSGVGFRARGDRFRN
CCCCCCHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHH
ILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYEDKLSRAGIVINNVDDIINLT
HHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHH
KSVKDLEKLDKALNSIPTELKGAKGEQLENPRLTLGDLGRLRELLPEENKHLIKNLSVVV
HHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCEEEE
TNQTKHELERYSEDTTPQQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIEG
ECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCC
LDREEVLCVKAEAGTAFEDRVNKAKQSAMEAISWFKARMDSLVEATIGGKWLHATSSVLN
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
REKVYYNIDNMIYINTGEVTTTNTSPTPEQRARAVKNGYDQTMQLLDSHKQTFDHPLMAI
CCCEEEECCCEEEEECCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH
LYIGHDKLKDALIDEKSEKEIFEASAHAQAILHLQEQIVKEMNDGDYSSVQNYLDQIEDI
HHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LTVDAKMDDIQKEKAFALCIKQVNFLSEGKLETYLNKVEAEAKAAAEPSWATKILNLLWA
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
PIEWVVSLFKGPAQDFKVEVQPEPVKVSTSENQETVSNQKDINPAVEYRKIIAEVRREHT
HHHHHHHHHCCCCCCCEEEECCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCC
DPSPSLQEKERVGLSTTFGGH
CCCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA