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The map label for this gene is rimP

Identifier: 52842973

GI number: 52842973

Start: 3126089

End: 3126532

Strand: Reverse

Name: rimP

Synonym: lpg2774

Alternate gene names: 52842973

Gene position: 3126532-3126089 (Counterclockwise)

Preceding gene: 52842974

Following gene: 52842972

Centisome position: 92.02

GC content: 35.14

Gene sequence:

>444_bases
ATGATAAATGATGACTTGATAGTGCTATTAGAGCCTATAATCAAAAATATGGGTTATGAACTTTGGGGCTGTGAATATCT
TTCCCAAGGGAAACACTCGTTATTAAGAATTTATATAGACAAGCCAGATGGAATAGGAATCGATGACTGTCAGGAAGTGA
GTAAGCAAGTCAGTGCAATGCTTGATGTTGAAGACCCTATTCCAGGGCATTATAGTTTGGAAATATCATCTCCTGGGATA
CCCCGGCCTTTGTTTAGTATCTGGCAATATCAGCGTTACCTTGGTTATGAAATTCATGTAAAAACTTTTAAGCCAGTCAA
TGGGAAGCGAAAATTATCAGGTATTATTGTTTCAGCATCAGAAGATACAATAGTATTGGATATTAATAATGAACATCAAG
AAATACTTTTATCAAATATTGTGAAAGCAAATTTGACAGTCTAG

Upstream 100 bases:

>100_bases
CCATTTTTGGGGTTTTTTATTATGTTGACTAGGATACTGTCTAAATCTAAGTCAGTTACCAGGCTTGGGCGAGTGCGCCC
TTTTTTTGTTTATACATACT

Downstream 100 bases:

>100_bases
AGAGGCGAACAATGAGCAAAGAATTGTTATTAGTTGCTGAGGCATTATCAAACGAAAGAGGCGTTAGTAAAGACGTCATT
ATACTTGCCATTCAGGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAMLDVEDPIPGHYSLEISSPGI
PRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVLDINNEHQEILLSNIVKANLTV

Sequences:

>Translated_147_residues
MINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAMLDVEDPIPGHYSLEISSPGI
PRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVLDINNEHQEILLSNIVKANLTV
>Mature_147_residues
MINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAMLDVEDPIPGHYSLEISSPGI
PRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASEDTIVLDINNEHQEILLSNIVKANLTV

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=132, Percent_Identity=46.2121212121212, Blast_Score=125, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_LEGPA (Q5X1C1)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_125127.1
- ProteinModelPortal:   Q5X1C1
- SMR:   Q5X1C1
- STRING:   Q5X1C1
- GeneID:   3116414
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp2822
- LegioList:   lpp2822
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   VMDVEDP
- ProtClustDB:   PRK00092
- BioCyc:   LPNE297246:LPP2822-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 16624; Mature: 16624

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAM
CCCCCHHHHHHHHHHHCCCCEECHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
LDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSAS
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEEEEECC
EDTIVLDINNEHQEILLSNIVKANLTV
CCEEEEEECCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAM
CCCCCHHHHHHHHHHHCCCCEECHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
LDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSAS
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEEEEECC
EDTIVLDINNEHQEILLSNIVKANLTV
CCEEEEEECCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA