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The map label for this gene is yfjD [C]

Identifier: 52842962

GI number: 52842962

Start: 3113646

End: 3114911

Strand: Reverse

Name: yfjD [C]

Synonym: lpg2763

Alternate gene names: 52842962

Gene position: 3114911-3113646 (Counterclockwise)

Preceding gene: 52842963

Following gene: 52842961

Centisome position: 91.68

GC content: 38.7

Gene sequence:

>1266_bases
GTGCAACTTCCTCTTTCCACTTTATTGGTTTTATTGTTTTTCCTAATTTGCCTGTCTGCTTTTTTTTCAGGTTCCGAAAT
TGGCATGATGTCTATCAATAGATATAAATTACGACACCTGGTAAAAAGCAATGATAAGCAAGCCATGCGGGTTAATTCCA
TGCTGGCTCGGCCTGATAAACTACTAAGTGTGGTTTTAATTGGGAATACTTTGGCAAATATAGTGGCATCAACTCTCGCC
ACTTTAATCGGGCAGCGGTTTTATGGGGATGCAGGGGTGGCTATAGCAACTGCTTTGTTGACTATACTGATCCTGGTTTT
TGCAGAAATGACTCCGAAAACTCTGGCTGCTATTTACCCTCAGCAAGTAGCTTTTGCATCCTCATTGCCGTTGAGCATTT
TACAATGGATTTTTTCTCCTTTGGTCCACTTAATCAGTTTGATTACCAATGGTATCCTAAGATTATTTAACATATCGGTA
AAACGCATGCAAAAGGAGACGCTAACTGGTGAAGAGTTGCGATCAGTGGTGCATGAAGCGGGAGGATTAATGCCTGTAGA
GCATAAAAGTATGTTGATTAGTTTATTGGATCTGGAACAAGCAACTGTTGAAGACATCATGGTTCCCAAAGCCGATATTG
TTGGGATTGATTTGGATTTACCCTGGATAGAACTTTTAGAGCAACTGGAAACAGCACAACACACAAGATTACCAATTTAT
CATGGTTCTATTGATCATTTGGCAGGGATGATCCACGTAAGAAATATTTTAAATTTAGCATTAGAAAATAAGTTGGATAT
GGAGAATTTGTTAAATAGTGCAGAAGTCCCCTACTTTATTCCAGAAGCTACCCCATTAAATATACAAATCCTTAATTTCA
GGAAAATGAAAAGAAGAAGTTGCTTTGTTGTGGATGAATATGGCGATATTCTTGGGCTTGTGACTATGGAAGATATTCTT
GAAGAAATAGTAGGTGAATTCACAACAGATATCGCTGCTTTAAGCCGTGATATAACTCCTCAGCAAGATGGGTCGGTCAT
AGTTGATGCCAGCATAACTATTCGCCATTTAAATCGCATGATGGGCTGGAGCCTGCCTTTAATCGGTCCAAGAACCCTAA
GTGGCCTGATTATCGAGCATTTAGGGTATATTCCACCCCCTGACTCTTGCCTGGTTATTGATCATTATCATATTGAAATA
TTAAGGGTCAGCGATAATATGATAAGAGGTGTAAAGATGATTAAGACTAATAAAAAAAGAAAATAG

Upstream 100 bases:

>100_bases
TTATATCTTTAGCTATAATAGCGGCATCATTTCAGCCCCTACTACAAAACACCAAGTTCTATTGTATAATTTGTCATTCT
TAAAAGTATAAGGATATTCA

Downstream 100 bases:

>100_bases
TTCTTATAGACTCTGACTATCAATTTGCTTCCAGCTTGTCCCTATTTTAGCTTACTTAAATATTTATGCATTGATAAAGC
GATATAATTTATTCATTTTA

Product: Mg2+ and Co2+ transporter CorB, hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDKLLSVVLIGNTLANIVASTLA
TLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYPQQVAFASSLPLSILQWIFSPLVHLISLITNGILRLFNISV
KRMQKETLTGEELRSVVHEAGGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRSCFVVDEYGDILGLVTMEDIL
EEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRMMGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEI
LRVSDNMIRGVKMIKTNKKRK

Sequences:

>Translated_421_residues
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDKLLSVVLIGNTLANIVASTLA
TLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYPQQVAFASSLPLSILQWIFSPLVHLISLITNGILRLFNISV
KRMQKETLTGEELRSVVHEAGGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRSCFVVDEYGDILGLVTMEDIL
EEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRMMGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEI
LRVSDNMIRGVKMIKTNKKRK
>Mature_421_residues
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDKLLSVVLIGNTLANIVASTLA
TLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYPQQVAFASSLPLSILQWIFSPLVHLISLITNGILRLFNISV
KRMQKETLTGEELRSVVHEAGGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRSCFVVDEYGDILGLVTMEDIL
EEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRMMGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEI
LRVSDNMIRGVKMIKTNKKRK

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=359, Percent_Identity=26.7409470752089, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI40068055, Length=337, Percent_Identity=23.4421364985163, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI40068053, Length=337, Percent_Identity=23.4421364985163, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI94681046, Length=332, Percent_Identity=24.0963855421687, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI145693175, Length=396, Percent_Identity=47.7272727272727, Blast_Score=384, Evalue=1e-108,
Organism=Escherichia coli, GI1790664, Length=438, Percent_Identity=24.6575342465753, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI87082033, Length=277, Percent_Identity=29.6028880866426, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786879, Length=240, Percent_Identity=25.4166666666667, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788119, Length=266, Percent_Identity=25.5639097744361, Blast_Score=78, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71980512, Length=355, Percent_Identity=24.7887323943662, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324512, Length=339, Percent_Identity=24.188790560472, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47013; Mature: 47013

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDK
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCHHH
LLSVVLIGNTLANIVASTLATLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
QQVAFASSLPLSILQWIFSPLVHLISLITNGILRLFNISVKRMQKETLTGEELRSVVHEA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEE
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRS
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCEEEEECHHHHHCCC
CFVVDEYGDILGLVTMEDILEEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRM
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHH
MGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEILRVSDNMIRGVKMIKTNKKR
HCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHCCCCC
K
C
>Mature Secondary Structure
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDK
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCHHH
LLSVVLIGNTLANIVASTLATLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
QQVAFASSLPLSILQWIFSPLVHLISLITNGILRLFNISVKRMQKETLTGEELRSVVHEA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEE
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRS
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCEEEEECHHHHHCCC
CFVVDEYGDILGLVTMEDILEEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRM
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHH
MGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEILRVSDNMIRGVKMIKTNKKR
HCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]