Click here to switch to the map view.

The map label for this gene is ybdK [C]

Identifier: 52842924

GI number: 52842924

Start: 3071680

End: 3072831

Strand: Direct

Name: ybdK [C]

Synonym: lpg2719

Alternate gene names: 52842924

Gene position: 3071680-3072831 (Clockwise)

Preceding gene: 52842922

Following gene: 52842925

Centisome position: 90.4

GC content: 35.68

Gene sequence:

>1152_bases
ATGAGATTATTATCTTTTAAAAAATCCAAAATTGTTTCAATTGGAACTGAATTGGAGTTTCAGATTATTGATTGCAGTTC
ATTGTCTCTGGTTTCTCGTTCAAAAGAATTGATGAGAGCCTTAAAAGACATGCGCTATCGCGACCAAATTAAGCCAGAAA
TTACGCAAAGCATGATTGAAATCAATTCATCAATTCATCAATCCGCTAAAGAAATGTATGACGAACTGTTAGAGCTACAA
AAAATTTTAGTAGAAACTGCTGCAAGCATTGATATTGCTTTTTGCGGCGGAGGGACACACCCATTTCAACAATGGACCAT
GCAAAAAATTTTTCCATCGAAACGATTCAAAAAAAAATTTAACCAATACCGTTATCTCAGCAAGCGCGCTACTGTTTTTG
GACAACATATTCATATCGGCTGCCCAACAGGAGACGATGCTATTTATTTAACTCATGCCTTGGCAAGATATGTCCCTCAC
TTTATTGCAATCAGCGCTTCATCGCCTTTCTATCTGGGTATTAATACAAATTATTGCTCATCACGCTCGACTATTTTTAA
TGCTTTTCCATTAAGTGGTGTCATTCCCTATCTGAGAAATTGGCAAGAATTCTCTGATTATTATCGCAAAATGTATCGTT
GGAAAATCATTGAAAATATGAAAGACTTTTATTGGGACATTAGACCAAAACCAGAACTTGGTACAATAGAAATAAGAGTC
TGCGACACCCCTTTAACTCTTAGAAAATCGATTCTTATTACTGCTTATATTCAAGCATTGGCACTCTATCTCCTCGAAGA
AAAATCTGTCCAGCTGTCTCATGATTTATACTATGTCTATAATTACAACCGGTTCCAAGCCAGCAGACATGGTCTGGAAG
GAGAATTAACTGTCACTGATAAAGACAGACCCATACCTATCATGGATGACATTCTTGAAACAATAAAAAAAATTGAACAA
TACATTAATGGACTTGGAAACAGCGAATATATTGAGGAACTGTATAGTGACGTCATCAATAAACAAAATGATAGCGTTCT
CATAAATAAAATTTATAAACAAGATGGCTCATTTAGCAAGCTGGTAGCAGCACAATGCGAACTATGGTTAAGTGATTCAA
AGGATAGGAAATGGATGACACAACCTTCTTAA

Upstream 100 bases:

>100_bases
GGGAAACATGAATCTTCATATCTATTCCCATTAAACAATCATCTAACCAAAAAACCTATCTGCTATACTTAAACAAGGAA
AATAATAGTCAGAGAAAGGA

Downstream 100 bases:

>100_bases
GTACGAAAGAAAAAATCCTGGAAATCAAACCATTAATGGAAAGTGCTTTCGGCAATATTCTAGGGTATCAAGAACTGGAG
AATATGTTGGCAATCTGTAC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MRLLSFKKSKIVSIGTELEFQIIDCSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIEINSSIHQSAKEMYDELLELQ
KILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKFNQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPH
FIAISASSPFYLGINTNYCSSRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CDTPLTLRKSILITAYIQALALYLLEEKSVQLSHDLYYVYNYNRFQASRHGLEGELTVTDKDRPIPIMDDILETIKKIEQ
YINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFSKLVAAQCELWLSDSKDRKWMTQPS

Sequences:

>Translated_383_residues
MRLLSFKKSKIVSIGTELEFQIIDCSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIEINSSIHQSAKEMYDELLELQ
KILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKFNQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPH
FIAISASSPFYLGINTNYCSSRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CDTPLTLRKSILITAYIQALALYLLEEKSVQLSHDLYYVYNYNRFQASRHGLEGELTVTDKDRPIPIMDDILETIKKIEQ
YINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFSKLVAAQCELWLSDSKDRKWMTQPS
>Mature_383_residues
MRLLSFKKSKIVSIGTELEFQIIDCSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIEINSSIHQSAKEMYDELLELQ
KILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKFNQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPH
FIAISASSPFYLGINTNYCSSRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CDTPLTLRKSILITAYIQALALYLLEEKSVQLSHDLYYVYNYNRFQASRHGLEGELTVTDKDRPIPIMDDILETIKKIEQ
YINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFSKLVAAQCELWLSDSKDRKWMTQPS

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=372, Percent_Identity=38.9784946236559, Blast_Score=318, Evalue=5e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 44669; Mature: 44669

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLSFKKSKIVSIGTELEFQIIDCSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIE
CCCCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
INSSIHQSAKEMYDELLELQKILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHH
NQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPHFIAISASSPFYLGINTNYCS
HHHHHHHHHHHHEECEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCC
SRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CCCHHEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
CDTPLTLRKSILITAYIQALALYLLEEKSVQLSHDLYYVYNYNRFQASRHGLEGELTVTD
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCHHHHHHCCCCCEEEECC
KDRPIPIMDDILETIKKIEQYINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFSK
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
LVAAQCELWLSDSKDRKWMTQPS
HHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLSFKKSKIVSIGTELEFQIIDCSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIE
CCCCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
INSSIHQSAKEMYDELLELQKILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHH
NQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPHFIAISASSPFYLGINTNYCS
HHHHHHHHHHHHEECEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCC
SRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CCCHHEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
CDTPLTLRKSILITAYIQALALYLLEEKSVQLSHDLYYVYNYNRFQASRHGLEGELTVTD
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCHHHHHHCCCCCEEEECC
KDRPIPIMDDILETIKKIEQYINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFSK
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
LVAAQCELWLSDSKDRKWMTQPS
HHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA