Click here to switch to the map view.

The map label for this gene is yfhR [C]

Identifier: 52842810

GI number: 52842810

Start: 2938631

End: 2939434

Strand: Direct

Name: yfhR [C]

Synonym: lpg2604

Alternate gene names: 52842810

Gene position: 2938631-2939434 (Clockwise)

Preceding gene: 52842809

Following gene: 52842827

Centisome position: 86.49

GC content: 39.05

Gene sequence:

>804_bases
GTGATCATGCTGAAACAAATTGTGCTAACCGGCCTAGTTATTATAGGGATTGTCATTACGCTAATGTACTTATTTCAGCG
TCACCTCATTTATTTCCCTAATAGACATACCCCAAAGTTGGAAGATTACAATGCATCGGATATGAAAGTAGTTTCCTTAC
GTACAAAAGATAATTTACATTTAAAATCCTGGTATAAACCTGCAAGCAAGCATCGCCCTACAATACTCTATTTGCATGGG
AATGCAGGCCATATTGGTTACAGAATGCCTTTGGTTCGTGAATTTATTGACGCTGGTTTAGGCGTATTTTTATTAGAATA
TCGTGGTTATGGAGGCAATCCGGGCAAACCTGGCGAGAAAGGTCTTTATGAAGATGGAGAAACAGCCATTGAATTTTTAA
TTCAACATGGTGTGCCATCAAAGCGCGTGATTCTATATGGGGAATCCATAGGTACCGGCGTAGCAACTCACCTTGCCACA
AAATACCCGGTTTGTGCGGTTATACTTCAATCACCCTTTACATCACTAACCAGGCTTGCCCAGTATCACTACCCATTGAA
CTTCCTTAAACCCTGGGATCAATATAATTCACTTGCCCGTATGAAAAAAATTAATGCCCCCATTCTGGTTTTGCATGGAA
AACTGGATCAGATAGTACCGTATCAAGAGGGCTTAAATGTTTTTAATGAAGCCAATGAACCTAAAAAAATGGTTTCTTTT
GACGACAAAGAACATAATGATTTGTGGAGCGCTGATAATTTTTCGAGGGAAATTATTCAATTTGCTTTAAACCAGTGTTC
CTAA

Upstream 100 bases:

>100_bases
CATTTCTTTTGAGGCAATTCGCCCATCATCGATATTGGCTTCCAATCGATTAAGGTGCATTATAATCAAATTAATACAAT
ATATTTAAATCCTTCTTAAG

Downstream 100 bases:

>100_bases
CTTTTGTGGATAGTTCATTGTTAAAGTATTTTCATCATCAACACTATTATTGAACTTAATCATCCATTTCCGCAAAGGCG
ATTGAAAATCTCCTTTCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MIMLKQIVLTGLVIIGIVITLMYLFQRHLIYFPNRHTPKLEDYNASDMKVVSLRTKDNLHLKSWYKPASKHRPTILYLHG
NAGHIGYRMPLVREFIDAGLGVFLLEYRGYGGNPGKPGEKGLYEDGETAIEFLIQHGVPSKRVILYGESIGTGVATHLAT
KYPVCAVILQSPFTSLTRLAQYHYPLNFLKPWDQYNSLARMKKINAPILVLHGKLDQIVPYQEGLNVFNEANEPKKMVSF
DDKEHNDLWSADNFSREIIQFALNQCS

Sequences:

>Translated_267_residues
MIMLKQIVLTGLVIIGIVITLMYLFQRHLIYFPNRHTPKLEDYNASDMKVVSLRTKDNLHLKSWYKPASKHRPTILYLHG
NAGHIGYRMPLVREFIDAGLGVFLLEYRGYGGNPGKPGEKGLYEDGETAIEFLIQHGVPSKRVILYGESIGTGVATHLAT
KYPVCAVILQSPFTSLTRLAQYHYPLNFLKPWDQYNSLARMKKINAPILVLHGKLDQIVPYQEGLNVFNEANEPKKMVSF
DDKEHNDLWSADNFSREIIQFALNQCS
>Mature_267_residues
MIMLKQIVLTGLVIIGIVITLMYLFQRHLIYFPNRHTPKLEDYNASDMKVVSLRTKDNLHLKSWYKPASKHRPTILYLHG
NAGHIGYRMPLVREFIDAGLGVFLLEYRGYGGNPGKPGEKGLYEDGETAIEFLIQHGVPSKRVILYGESIGTGVATHLAT
KYPVCAVILQSPFTSLTRLAQYHYPLNFLKPWDQYNSLARMKKINAPILVLHGKLDQIVPYQEGLNVFNEANEPKKMVSF
DDKEHNDLWSADNFSREIIQFALNQCS

Specific function: Unknown

COG id: COG1073

COG function: function code R; Hydrolases of the alpha/beta superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To S.pombe bem46 and yeast YNL320w [H]

Homologues:

Organism=Homo sapiens, GI49355781, Length=266, Percent_Identity=29.3233082706767, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI71051602, Length=201, Percent_Identity=32.3383084577114, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI71051600, Length=193, Percent_Identity=32.6424870466321, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI151301175, Length=215, Percent_Identity=31.1627906976744, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI194306564, Length=182, Percent_Identity=31.3186813186813, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI194306562, Length=182, Percent_Identity=31.3186813186813, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI32451492, Length=209, Percent_Identity=33.4928229665072, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI32528310, Length=209, Percent_Identity=33.9712918660287, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI109689718, Length=200, Percent_Identity=32, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI24308097, Length=200, Percent_Identity=32, Blast_Score=92, Evalue=6e-19,
Organism=Escherichia coli, GI226510965, Length=272, Percent_Identity=29.0441176470588, Blast_Score=117, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI71988362, Length=184, Percent_Identity=33.1521739130435, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17566318, Length=187, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17532877, Length=203, Percent_Identity=27.0935960591133, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI25143554, Length=157, Percent_Identity=31.2101910828025, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71985392, Length=203, Percent_Identity=27.0935960591133, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71985387, Length=202, Percent_Identity=25.7425742574257, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324009, Length=280, Percent_Identity=30.7142857142857, Blast_Score=102, Evalue=8e-23,
Organism=Drosophila melanogaster, GI17137566, Length=277, Percent_Identity=29.2418772563177, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI281362521, Length=233, Percent_Identity=29.1845493562232, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI281362519, Length=233, Percent_Identity=29.1845493562232, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571878, Length=233, Percent_Identity=29.1845493562232, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24655464, Length=190, Percent_Identity=27.8947368421053, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24655467, Length=190, Percent_Identity=27.8947368421053, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002925 [H]

Pfam domain/function: PF01738 DLH [H]

EC number: NA

Molecular weight: Translated: 30433; Mature: 30433

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMLKQIVLTGLVIIGIVITLMYLFQRHLIYFPNRHTPKLEDYNASDMKVVSLRTKDNLH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEEECCCCCC
LKSWYKPASKHRPTILYLHGNAGHIGYRMPLVREFIDAGLGVFLLEYRGYGGNPGKPGEK
HHHHCCCHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCC
GLYEDGETAIEFLIQHGVPSKRVILYGESIGTGVATHLATKYPVCAVILQSPFTSLTRLA
CCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHCHHHHHHHHH
QYHYPLNFLKPWDQYNSLARMKKINAPILVLHGKLDQIVPYQEGLNVFNEANEPKKMVSF
HHHCCCHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHCCCCCHHHHCC
DDKEHNDLWSADNFSREIIQFALNQCS
CCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIMLKQIVLTGLVIIGIVITLMYLFQRHLIYFPNRHTPKLEDYNASDMKVVSLRTKDNLH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEEECCCCCC
LKSWYKPASKHRPTILYLHGNAGHIGYRMPLVREFIDAGLGVFLLEYRGYGGNPGKPGEK
HHHHCCCHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCC
GLYEDGETAIEFLIQHGVPSKRVILYGESIGTGVATHLATKYPVCAVILQSPFTSLTRLA
CCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHCHHHHHHHHH
QYHYPLNFLKPWDQYNSLARMKKINAPILVLHGKLDQIVPYQEGLNVFNEANEPKKMVSF
HHHCCCHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHCCCCCHHHHCC
DDKEHNDLWSADNFSREIIQFALNQCS
CCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]